Dickeya fangzhongdai ND14b: LH89_16825
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Entry
LH89_16825 CDS
T03347
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH89_16825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ced03019
]
LH89_16825
03016 Transfer RNA biogenesis [BR:
ced03016
]
LH89_16825
Enzymes [BR:
ced01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LH89_16825
Messenger RNA biogenesis [BR:
ced03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LH89_16825
Transfer RNA biogenesis [BR:
ced03016
]
Prokaryotic type
tRNA degradation factors
LH89_16825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
TFIIE_beta
Rho_RNA_bind
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AIR70794
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All DBs
Position
3792375..3794852
Genome browser
AA seq
825 aa
AA seq
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MSQDPFLEREAEKYEFPIPSREYILEHLAKRDTPISREELASDLQLTNDEQLEALRRRLR
AMERDGQLVFTRRQCYALPEKLDLLRGTVLGHRDGYGFLRVEGRKDDLYLSAEQMKTVIH
GDVVLAQPLGEDRRGRREGRIVRILEPRTSQIVGRYFTEAGTGFVVPDDSRLSFDILIPP
EFIAGARMGSVVVVELTQRATRRTKAIGKIVEILGDNMGTGLAVDIALRTHEIPHSWPPK
VEEQVGDLTDEVPESAKKGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TQGKLSGYKFYEAVMSSHARLTYTKVWSILQGDEALREHYQPLVAPLEELHRMYKVLDHA
REVRGGIAFETEEAKFIFNAERRIERVEAVVRNDAHKLIEECMILANISAAKFVEKSEEP
ALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMDSIADRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALTSYAHFTSPIRRYPDLSLHRAIKYLLSDRKARWTHSGGWH
SDFNEMLQLGEHCSMTERRADEATRDVADWLKCDFMQDHVGEAFTGIISSVTGFGFFVRL
NDLFIDGLVHVSTLDNDYYRYDNVGQRLIGESRGQVYRLGDEVQIRVEAVHMDERKIDFA
LVSSTRKVRGEGKTARDRAKKGGEADAKPPRRRRTGQRANFEPDSAFRSDGDGKRQPAGK
GKDKDKAKTGGRKKTAKSQKNAEKTRKIAAATRAKRASKKKAPAE
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccgtttctggaacgtgaagcagaaaaatacgaatttcccatccccagc
cgcgagtacattcttgagcatctggcaaaacgggacacgcccatcagccgtgaggaactg
gcctccgatctgcaactgaccaatgatgaacaactggaagcgttgcgtcgtcggctgcgc
gctatggagcgcgacggtcaactggtgttcacccgccgccagtgctacgcgctgccggaa
aaactggatctgctgcgcggcacggtgctcggccaccgcgatggctacggcttcctgcgg
gtggaagggcgcaaagacgatctttacctctccgccgaacagatgaagacggtgatccac
ggcgatgtggtgctggcccagccgttgggcgaagaccgcagagggcgccgcgaagggcgc
atcgtgcgtattctggagccccgcaccagccagatcgtcgggcgttacttcaccgaggcc
ggtaccggcttcgtggtgccggacgacagccggctgagcttcgacatcctgatcccgccg
gaatttatcgccggcgcccgcatgggctccgtggtggtggtggaactgacccagcgcgcc
actcgccgcaccaaggctatcggcaagatcgtggaaattctcggcgacaacatggggacc
gggctggcggtggatatcgcgctgcgtacccatgaaattccgcacagctggccgcccaag
gtggaagagcaggtgggagacctgacggacgaggtgccggaaagcgccaagaaaggccgg
gtggatctgcgttccctgccgctggtgaccatcgacggcgaagacgcgcgcgattttgac
gatgcggtgtactgcgagaaaaaacgcggcggcggctggcggctgtgggtggcgatcgcc
gacgtcagctactacgtgcgtcccggcacggcgctggaccatgaagcccgcgcgcgcggc
acctcggtttacttcccgtcgcaggtggtgccgatgctgccggaagtcctgtccaatgga
ctgtgttcgctcaacccgcaggtggatcgcctgtgtatggtgtgcgaaatgacgatttcc
acccaggggaaactgtccggctataaattttatgaggcggtgatgagctctcacgcccgt
ctcacctataccaaggtgtggagcattctgcagggcgacgaggcactgcgtgagcattac
cagccgctggtggcgccgctggaagagctacaccggatgtacaaggtgctggatcatgcc
cgtgaggtgcgcggcggcatcgctttcgaaaccgaagaagccaaattcattttcaacgcc
gaacgccgcattgagcgagtggaagcggtggtgcgcaacgacgcgcacaagctgattgaa
gagtgcatgattctggccaacatctcggcggcgaagtttgtcgagaagagcgaagagccg
gcgctgttccgcgtgcatgaccagcccagcgaggatcatgtgctggcgctgcgcagcgtg
cttggcgagctggggctgacgctgaaaggcggcatgaagccgcagccgaaagattacgcc
gaactgatggattccatcgccgacaggccggatcacgaaatgctgcaaaccatgctgctg
cgttcgatgaaacaggcggtgtatgacccggaaaaccgcggccactttggcctggcgctg
acctcgtacgcgcatttcacctcgccgattcggcgttacccggatctgtcgctgcatcgc
gccatcaagtacctgctcagcgaccgtaaagcccgctggactcacagcggcggctggcac
tcggatttcaacgagatgctgcagctgggcgaacactgttcgatgaccgaacgccgggcc
gatgaagccacgcgcgacgtggctgactggctgaagtgtgatttcatgcaggatcatgtc
ggtgaagccttcaccggtattatctccagcgtcaccggtttcggtttctttgtgcgcctc
aacgacctgtttatcgacggtctggttcatgtttccacgctggataacgactactatcgt
tatgacaatgtcggccagcgcttgatcggcgaatcccgcggtcaggtatatcggttgggg
gatgaagtgcagatccgcgttgaagccgtgcatatggatgaacgcaagatcgatttcgca
ctggtgtcttccacccgtaaggtgcgcggcgaaggcaaaaccgcgcgcgatcgggcgaag
aaaggcggcgaagcggacgcaaaaccgccgcgtcgtcgtcgtaccgggcagcgcgccaac
tttgagccggatagcgcattccgcagcgacggcgacggcaagcgtcagcctgccggcaag
ggcaaggataaagataaagcgaaaaccggcggcaggaagaagacggcaaaatcgcaaaag
aacgctgaaaaaacgcgtaaaattgctgccgccactcgcgccaaacgcgccagcaaaaag
aaggcgccggcggaataa
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