Dickeya fangzhongdai ND14b: LH89_17190
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Entry
LH89_17190 CDS
T03347
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ced
Dickeya fangzhongdai ND14b
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ced03016
]
LH89_17190 (truD)
Enzymes [BR:
ced01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
LH89_17190 (truD)
Transfer RNA biogenesis [BR:
ced03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LH89_17190 (truD)
Prokaryotic type
LH89_17190 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AIR70865
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All DBs
Position
3878953..3880002
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AA seq
349 aa
AA seq
DB search
MVMRESLFWLHGEPAATGVLKASPDDFFVAEDLGFAPDGDGEHVLVRVRKRGCNTTFVAE
ALAKFAGIPARSVSYAGLKDRHAVTEQWFCLHLPGKAEPAWSAFALEGCEILEAQRHRRK
LRIGALRGNHFSLVLREVSDRADVEARLALIAGEGVPNYFGSQRFGRDGNNLEQARRWAN
DEIRVKDRSKRSFYLSAVRSELFNLMASARLTTYGATQVLTGDALQLAGRGSWFVVKPEE
QADAQSRVIAGELQITAALPGQGESGVQEQALAFEQQCLEGQTLLLSLLTRERVDSARRT
VMLYPQDLRWSWRDDATLELHFWLPAGCFATSVVRELLLPVQQENEWAA
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggtaatgcgtgaatcactgttttggttgcatggcgaaccggccgcaacgggggtgctg
aaagcatctccggatgatttttttgtcgccgaagatctgggatttgcaccggatggcgat
ggcgagcatgtgctggtgcgtgtgcgcaaacgcggttgcaacaccacgtttgtggcggaa
gcgctggcgaagttcgccggcattccggcgcgttccgtcagctatgccgggttgaaagat
cgccatgcggtaaccgaacaatggttctgcctgcatttgccgggcaaagcggagccggcg
tggtcggcatttgcgctggaagggtgcgaaattcttgaagcgcagcgccatcgccgtaaa
ctgcgtattggcgcgttgcgcggcaaccattttagtctggtgctgcgcgaggttagcgac
cgtgccgatgttgaagcccgtctggcgctgatcgccggtgagggcgtgcccaactatttc
ggcagccagcgtttcggtcgtgacggcaacaatctggaacaggcccgtcgctgggcgaat
gacgagattcgggttaaggatcgcagcaaacgcagcttctacctttccgccgtgcgcagt
gagttattcaacctgatggccagtgcgcgtctgacgacgtatggcgcaacgcaggtgttg
accggcgatgcgctgcaactggctggccgcggcagttggtttgtggtcaagccggaagaa
caagctgacgcgcagtcgcgcgtgatagccggcgaactgcagattaccgccgcattgccg
gggcagggcgaatcaggtgtgcaggagcaggcgctggcgttcgagcagcaatgcctggaa
ggccagacgctgttgttgtcattgctgacgcgtgaacgggtggacagcgcgcgccgcacc
gtcatgctatatccgcaagacctgcgctggtcatggcgggatgacgccacgcttgagtta
cacttctggttgccggcagggtgcttcgccaccagcgtggtgcgggagctgctgcttccc
gtgcaacaggaaaacgagtgggcggcctga
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