KEGG   Dickeya fangzhongdai ND14b: LH89_18340
Entry
LH89_18340        CDS       T03347                                 
Symbol
rnc
Name
(GenBank) ribonuclease III
  KO
K03685  ribonuclease III [EC:3.1.26.3]
Organism
ced  Dickeya fangzhongdai ND14b
Pathway
ced03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ced00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    LH89_18340 (rnc)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ced03019]
    LH89_18340 (rnc)
   03009 Ribosome biogenesis [BR:ced03009]
    LH89_18340 (rnc)
   03036 Chromosome and associated proteins [BR:ced03036]
    LH89_18340 (rnc)
Enzymes [BR:ced01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.3  ribonuclease III
     LH89_18340 (rnc)
Messenger RNA biogenesis [BR:ced03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LH89_18340 (rnc)
Ribosome biogenesis [BR:ced03009]
 Eukaryotic type
  90S particles
   RNase
    LH89_18340 (rnc)
 Prokaryotic type
  rRNA processing factors
   LH89_18340 (rnc)
Chromosome and associated proteins [BR:ced03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Microprocessor complex
     LH89_18340 (rnc)
SSDB
Motif
Pfam: Ribonucleas_3_3 Ribonuclease_3 dsrm DSRM_2 RM44_endonuclase DND1_DSRM
Other DBs
NCBI-ProteinID: AIR71066
UniProt: A0A2K8QPM1
LinkDB
Position
4108805..4109485
AA seq 226 aa
MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKHNERLEFLGDSILSFVIANALYHRF
PRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVEALI
GGVFLDSNIQTVERLILQWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVVQVR
GEAHDQEFTIHCQVSGFSEPVVGTGSSRRKAEQAAAEQALKKLELE
NT seq 681 nt   +upstreamnt  +downstreamnt
atgaatcccatcctgataaatcgtttacaaaaaaagctgggctatactttccaacaatat
gaccttttattgcaggcgctgactcaccgtagcgccagcagtaaacataacgaacggctg
gagttcctgggggattctatcctgagttttgttatcgccaatgcgctgtatcaccggttt
ccgcgtgttgacgaaggcgatatgagccggatgcgcgctacgctggtgcgcggcaatacg
ctggcggagattgcccgagagtttgaactgggcgagtgcctgcgtcttggtcccggcgaa
ttgaaaagcggcggtttccgccgtgagtcgattctggcggataccgtggaagcgttgatt
ggcggtgtatttctggacagcaatatccagaccgtcgagcggctgatcctgcagtggtac
cagactcgtctggatgagattagcccaggcgacaagcaaaaagatccgaaaacccgcctg
caggaattcctgcagggacgccatctgccgttgcctacctatctggtagtgcaggtgcgt
ggcgaggcgcacgatcaggaatttaccattcattgccaggtcagcgggtttagcgagccg
gtagtgggtaccgggtcaagccgtcgtaaagctgaacaggctgcggcggaacaggccctg
aaaaagctggagcttgaatga

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