Dickeya fangzhongdai ND14b: LH89_18465
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Entry
LH89_18465 CDS
T03347
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced00040
Pentose and glucuronate interconversions
ced01100
Metabolic pathways
ced02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
LH89_18465
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LH89_18465
Enzymes [BR:
ced01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
LH89_18465
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Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
AIR71089
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Position
complement(4137549..4138763)
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AA seq
404 aa
AA seq
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MNNSRMSSVSTQKTAGRSALGTKSALAAIIATTMMVSVASAASLQTAKATETASTGWATQ
SGGTTGGAKASSSKIYAVKNISEFKAALNGTDSSPKIIQVTGAIDISGGKAYTSFDDQKA
RSQISIPSNTTIIGIDSKGKFTNGSLVVKGVSNVILRNLYIETPVDVAPHYEEGDGWNAE
WDAAVIDNSDHVWVDHVTISDGSFTDDKYTTKNGEKYVQHDGALDIKRGSDYVTVSNSRF
ELHDKTILIGHSDNNGSQDSGKLRVTFHNNLFDRVGERTPRVRFGSVHAYNNVYVGDVNH
KAYRYQYSFGIGTSGSLLSESNAFTIDNLKKISGRDKECSVVKAFNGKIFSDKGSIINGA
SYNLNGCGFGFSSYTAKIPYKYSAQTITTSLANSISSNAGYGKL
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaacaactcacgtatgtcttccgtttcaacacagaaaacagcaggacgttcagccctg
ggaaccaaaagcgcactggcggcgattatcgccaccaccatgatggtttccgtggcttcc
gctgccagcctgcaaaccgccaaggcgacagaaacagcgtcaaccggctgggcgacgcaa
agcggcggcactaccggcggcgccaaagcgtcatcatccaaaatctacgcggtaaaaaac
atcagcgaattcaaagcggcgctgaacggaaccgattcgtcgcccaagatcatccaggta
acaggggcaattgatatcagcggcggtaaagcctacaccagctttgacgatcagaaagcc
cgcagccagatcagcattccgtccaataccaccatcatcggtatcgacagcaaaggcaaa
ttcaccaacggctcgctggtggtgaaaggcgtcagcaacgttatcctgcgtaacctgtat
atcgaaacgccggtagacgtggcgccgcattacgaagaaggggatggctggaacgcagaa
tgggacgccgcggtgattgataactcagaccacgtctgggttgaccatgtcaccatcagc
gacggcagcttcaccgatgacaaatacaccaccaaaaacggcgaaaaatacgtccagcac
gacggcgcgctggatatcaaacgcggctccgactatgtgaccgtttccaacagccgtttc
gaactgcacgacaaaaccatcctgatcggccacagcgacaacaatggctcacaggactcc
ggcaaactgcgcgtgaccttccacaacaacctgtttgaccgcgtcggcgagcgtaccccg
cgcgtacgcttcggtagcgttcacgcttacaacaacgtttacgttggcgacgtcaaccac
aaagcctaccgctatcagtacagcttcggtatcggcaccagcggtagcctgctgtctgag
tccaacgcgtttaccattgataaccttaagaagatcagcggtcgcgacaaggaatgcagc
gtggtcaaagcgtttaacggcaagatcttctctgataagggttcgatcatcaacggcgct
tcgtacaatctgaatggttgcggctttggcttcagttcatataccgccaagatcccgtac
aaatattcagcccagaccattaccaccagcctggcaaacagcatcagcagcaacgcgggt
tacggcaaactgtaa
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