KEGG   Dickeya fangzhongdai ND14b: LH89_18885
Entry
LH89_18885        CDS       T03347                                 
Symbol
helD
Name
(GenBank) DNA helicase IV
  KO
K03658  DNA helicase IV [EC:5.6.2.4]
Organism
ced  Dickeya fangzhongdai ND14b
Brite
KEGG Orthology (KO) [BR:ced00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ced03400]
    LH89_18885 (helD)
Enzymes [BR:ced01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LH89_18885 (helD)
DNA repair and recombination proteins [BR:ced03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    LH89_18885 (helD)
SSDB
Motif
Pfam: Helicase_IV_N UvrD-helicase AAA_19 UvrD_C_2 UvrD_C AAA_30 AAA_12 AAA_22 DEAD ResIII Terminase_6N AAA_11
Other DBs
NCBI-ProteinID: AIR71168
LinkDB
Position
4234075..4236132
AA seq 685 aa
MELKSTALGKHLAQHPYNRVQLLNAGVNVSGDRHEYLIPFNQLLAIRCKKGLIWGELEFE
LPENKVVRLHGTEWQETQQFFRHLFKSWQSWSQEMSDVCKDVLQQLVDAIAEQEAADGWF
SRQTLTRVQQDIRAGFAALPLPLARLDEFEHCRDNYQRCLRWLEQGDALRQQANQRWTET
ILAEQKTFFDTVESSPLNPSQCQAVVNGENAVLVLAGAGSGKTSVLVARAAWLLHRAEAS
AQQILLLAFGRQAADEMNSRIRERLHSDEVQAKTFHALALHIIQQCSRKAPVISQLETDG
AHRRAFLIEHWQQQCDEKKTQAKGWRQWLTEELEWTLPEGNFWQDAAIASRLAGRLERWL
GLMRMQGGTQSEMLALADDETRPLFQQRLRLMAPLLKAWKKALKDEGAVDFSGLIHQAVN
YLDKGRFVSPWRHILVDEFQDISPQRARLLDALRRQVPDSSLFAVGDDWQAIYRFSGAEL
TLTTAFEQHFGEGAQCVLDTTYRFNHRIGDIASRFIQQNPAQLKKALNSLRDGNKKSVVL
LPQEQLDALLDKMSGYVTAEARILVLARYHHLRPDVLEKAQTRWPHLHLDFMTIHASKGQ
QADYVIVLGLHEGRDGFPAPPRESVLEAVLLPRPEPFPDAEERRLLYVALTRAKHQVWLL
YDRDEPSVFVDDLHQLGVPMQRKPG
NT seq 2058 nt   +upstreamnt  +downstreamnt
atggaactgaaatcgaccgcgttgggtaagcatctggcgcagcatccctacaaccgtgtg
caattgctgaatgccggcgtcaatgtcagcggtgatcggcatgaatatctcattccgttt
aatcagttgctggcgattcgctgcaagaaagggttgatctggggcgagctggaattcgag
ttgccggaaaacaaggtggtgcgcctgcacggtacggagtggcaggagacccagcagttc
tttcgtcatctgttcaagtcctggcagagctggagccaggagatgagcgatgtctgcaaa
gacgtattgcaacagctggtagatgcgattgcggagcaggaagcggcggatggctggttc
agccgtcagacgctgacgcgcgtgcagcaggatatccgggcggggttcgccgcgctgccg
ttgccgctggcgcgtctggacgaatttgaacattgccgggacaactatcagcgttgtctg
cgctggctggagcagggggacgcattgcgccagcaagctaaccagcgctggacggaaacg
attctggcggagcagaaaacgtttttcgatacggtggaaagttcgccgctgaatcccagc
cagtgtcaggcggtggtgaatggcgaaaacgccgtgctggtgctggccggcgccggcagc
ggcaaaacgtcggtactggtggcgcgtgccgcctggttgctgcatcgggccgaggcgtcg
gcgcaacagatcctgctgttggcgtttgggcggcaggccgcggatgaaatgaacagtcgt
atccgtgagcggctgcatagcgacgaggtccaggccaagaccttccatgcgctggcgctg
cacatcattcagcagtgcagccgtaaggcgccggtgatcagccaactggaaaccgacggc
gcgcaccggcgcgcatttctgatcgagcactggcagcaacagtgtgacgaaaagaaaacc
caggcgaaaggatggcggcagtggctgaccgaagaactggagtggacgctgcctgagggg
aatttctggcaggatgcggctattgcgtcgcggctggccggccggctggagcggtggttg
gggctgatgcggatgcaaggcggcacccagagcgaaatgctggcgctggccgatgacgaa
acgcgcccgttgtttcagcaacggttgcggctaatggcgccattactgaaagcctggaaa
aaagcgttgaaagacgaaggagcggtggacttttccggcctgatccatcaggcggtcaac
tacctggacaaaggccgttttgtcagtccgtggcggcatattctggtagacgaatttcag
gatatttctccccagcgtgcccgtttgctggatgcgctgcgacggcaggttcccgatagc
agtctgtttgcggttggcgatgactggcaggcgatctatcgcttcagcggcgctgagctg
acgctcaccacggcatttgaacagcactttggcgaaggcgcgcagtgcgtgctggatacc
acttaccgctttaatcaccgtatcggggatatcgccagccgtttcatccaacaaaatccg
gcccaactgaaaaaagcactcaatagcctgcgggacggcaataaaaaatcggtggtgtta
ttgccgcaggaacagcttgatgccttgctggacaagatgagcgggtatgtgacagcggaa
gcgcgcattctggtgctggcgcgttatcaccacctgcggcctgatgtgctggaaaaggcg
cagacccgctggccgcatttgcatcttgatttcatgactattcatgccagcaaagggcag
caggcggactatgtgattgtgctggggctgcatgaagggcgtgacggttttcccgcgccg
ccgcgtgaatcggtgctggaagcggtgctgttgccgcggccggagcctttcccggatgcg
gaagagcgccgattgttatatgtggcgttgacccgggcgaaacatcaggtgtggctgctg
tacgatcgtgatgagccctcggtgtttgtggacgatttgcatcagctgggcgtaccgatg
cagcgcaaaccgggctaa

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