Dickeya fangzhongdai ND14b: LH89_21080
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Entry
LH89_21080 CDS
T03347
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH89_21080 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ced03019
]
LH89_21080 (rne)
03009 Ribosome biogenesis [BR:
ced03009
]
LH89_21080 (rne)
Enzymes [BR:
ced01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LH89_21080 (rne)
Messenger RNA biogenesis [BR:
ced03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LH89_21080 (rne)
Ribosome biogenesis [BR:
ced03009
]
Prokaryotic type
rRNA processing factors
LH89_21080 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AIR71580
LinkDB
All DBs
Position
complement(4714519..4717704)
Genome browser
AA seq
1061 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYNAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLELPDGMGLIVRTAGVGKSADAL
QWDLAFRLKHWEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELA
KEHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPHDGME
TPHYSVLRVRKGEEKQTLSYMLPQLLDVEAQPSTEEQVSERRVPEQPALASFTMSDIPPD
ETKPAPAVAAPKAEKQPASSERSLFGRFVGALKGIFAAPADAKDKPAETVEAASDEQEQK
QERRNNRRQSGRRERTRDNREPRERDEQRRNKRTPSQNADIETAPVTEASAQDKAARDEQ
RREQRAERQRRRQEEKRQAQSEVKELNTVATDTEDTGTEQEKPAQVMQRRQRRQLTQKVR
VQDSDATGENTEAQLPAVPYVQEPSVVEVTEPVALAAEGADTENDAAESNRENGLPRRSR
RSPRHLRVSGQRRRRYRDERYPAQSPMPMAQASASPEMASGKVWIRYPVAQPQQPELVEE
QVSESIDAPLSVAPELAAAAVATLPEAVDALDTTPASAPTTETPAAVSAPTQQETVLSEA
TQDLDANVQEEAPQSQETQAPAPQPAETAALVEDAVEEAPAAVVAAEVVVADSDATTSSE
PAETQVTEQPQVIHEPAQVENTPAAQEPVAAPAPAETTTVVSARQHHAAAPMTRAPAPAY
VPDAPRVSDWHRPAFAFTGKGSAGGHAAENQASAPATRPVE
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgccttggttgat
ggtcagcggctttacgatctggacattgaaagccccggtcatgaacagaaaaaggcaaac
atttacaaaggcaagatcacccgcatagaacccagccttgaagccgcttttgttgattat
ggcgcagagcgtcatggcttcctccctctcaaagaaatcgcccgcgaatacttccccagc
aactacaatgcgcatggccgcccgaacatcaaagatgtgcttcgtgaaggccaggaagtc
atcgttcaggtggacaaagaggagcgcggcaacaaaggcgccgcattgaccacgttcatc
agtctggccggcagctatctggtgctgatgccgaacaacccgcgggcaggcggtatttcc
cgccgtatcgaaggggatgaccgtaccgaattaaaagaagcgctgggctcgctggaactg
ccggacggtatgggcttgatcgtccgtaccgccggtgtgggcaaatccgccgacgcgctg
cagtgggatctggcgtttcgcctgaaacactgggaagcgatcaagaaagcggcggaaggc
cgttcggcaccgttcttgatccatcaggaaagcaacgttatcgtccgcgcgtttcgtgat
tacctgcgtccggacatcggcgaaatcctgatcgataaccccaaaattctggaactggcc
aaagagcatatcgctgcgctggggcgcccggacttcagcagtaaaatcaagctgtatacc
ggcgagatcccgctgttcagtcattatcagatcgaatcgcagatcgaatccgctttccag
cgcgaagtgcgtctgccttccggcggttcgattgttatcgacaccaccgaagcgctgacc
gccattgatatcaactccgcccgtgcaacccgcggcggcgacattgaagaaaccgccttt
aacaccaacctggaagcggcggatgagattgcccgtcagctgcgcttgcgcgacctgggt
ggtttgatcgtcatcgacttcatcgacatgaccccggtccgccatcagcgtgaggtggaa
aaccgcctgcgtgacgcggtgcgtcaggatcgcgcccgcatccagatcggccgtatttcc
cgctttggtctgctggaaatgtcccgtcagcgtctaagcccgtcactgggcgaatccagt
caccacgtctgcccgcgctgtaacggcaccggcaccatccgtgacaatgaatcgctgtcg
ttgtcgatcctgcgtctgattgaagaagaggcgctgaaagagaacaccaaagaagtccac
gctatcgtgcccgtgcccatcgcgtcttacctgcttaacgagaagcgtgaagcggtcaac
gcgattgagaaacgtcagggaggcgtgcgcgccattatcgtaccgcatgacggtatggaa
accccgcactactccgtactgcgtgtccgcaaaggcgaagaaaagcagaccctgagctat
atgttgcctcagttgttggatgtcgaagcacagccttcgacggaggaacaggtgtccgaa
cgtcgggtaccggaacagccggctctggcgtctttcaccatgtcggacatcccgcccgat
gaaaccaagccagccccggcggttgccgcaccgaaagcggaaaaacaaccggcctcttcc
gaacgcagcctgttcggtcgttttgtcggcgcgctgaaaggcatctttgccgcgccggcc
gacgccaaagacaaaccggctgaaactgtcgaagcagcatccgatgagcaggaacaaaag
caggaacgccgaaacaaccgccgtcaatccggtcgtcgcgaacgcacccgcgacaatcgc
gagccgcgcgagcgtgacgaacagcgccgtaacaagcgcacgccgtcgcagaacgccgac
atcgaaaccgcgccggtaacggaagcctctgcacaagacaaagccgcgcgtgatgaacaa
cgtcgtgagcagcgtgccgagcgccaacgccgtcgtcaggaagaaaaacgtcaggcgcag
agcgaagttaaagagctgaacaccgtggctaccgacacggaagacactggtaccgagcag
gaaaaaccggcacaggtgatgcagcgtcgtcaacgtcgccaactgacccagaaagtgcgg
gttcaggacagcgatgccacaggagagaataccgaagctcagcttcccgctgttccgtac
gttcaggaaccgtcagtggttgaagtgactgaacctgtcgcattggctgctgaaggagct
gatacggaaaatgacgctgctgaaagcaaccgtgaaaatggtctgccgcgtcgctctcgc
cgttcgccgcgccatctgcgagtcagcggtcagcgtcgtcgtcgttaccgcgatgaacgc
tacccggcgcagtcgccgatgccgatggcacaggcttcagcctcaccggaaatggcctct
ggcaaagtttggattcgttatccggttgcccagccgcaacagccagagctggtggaagag
caggtatccgagtccattgatgccccgctttccgtggcaccggaactggcggcagcagcg
gttgctacgctcccggaggcggtagacgctctggatacgactccggcaagcgccccgacg
acggaaacgccagccgcagtatccgccccgacgcagcaagaaaccgtgctgagcgaagcg
actcaggatctcgacgccaacgtgcaggaagaggctcctcagtctcaggaaacacaggcg
ccggcaccacagccagcggaaacggcggctcttgttgaagacgcggtcgaagaggctccc
gccgcggttgttgctgccgaagttgttgttgctgatagcgacgcgacaaccagcagcgaa
ccagccgaaacgcaggtaactgaacaaccgcaggttattcacgagccggcacaggttgag
aatacgccagccgctcaggaaccggtcgctgcgccggcgccagccgagaccacgaccgta
gtgtcggcccgtcagcaccatgccgccgcgccgatgactcgcgcacctgcgccggcatat
gttccggacgcaccgcgcgtcagcgactggcatcgcccggcatttgccttcaccggtaaa
ggttctgccggtggtcatgctgccgagaatcaggccagcgcaccagcgacacggccggtg
gaataa
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