Dickeya fangzhongdai ND14b: LH89_21310
Help
Entry
LH89_21310 CDS
T03347
Name
(GenBank) murein L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
ced
Dickeya fangzhongdai ND14b
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ced01002
]
LH89_21310
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ced01011
]
LH89_21310
Peptidases and inhibitors [BR:
ced01002
]
Cysteine peptidases
Family C82
LH89_21310
Peptidoglycan biosynthesis and degradation proteins [BR:
ced01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
LH89_21310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AIR71626
LinkDB
All DBs
Position
4765859..4767547
Genome browser
AA seq
562 aa
AA seq
DB search
MLLVKRNTQRLLLGVASSIWLGSLLTSFSAQAASSTAPGSAVSLAASKSHTSVTAGLPAG
ISPHYLGELTALYTRQHMQPMWNDSHVVNAFQQQLAEVALSGIQPQFTTWVTWLTDPKLN
GFARDVVLSDAMLGYMQFVAGVEKNGNSWLYSSVPYKLAMPSAEMIEQWQRAVASGNGLA
FVASLAPRHSQYAKMHDALKNMLTDNRPWPKLMLADSLRPGDESNALPVLKEILLRTGML
NQDGSAMPLFNEASSGNTSPLRYEGDVVDAVKRFQHSQGLQDDGVIGKRTRDWLNVSSQM
RATLLALNIQRLRLVPDKVSSGIVVNIPNYSLSYYQNGAEILSSKVIVGQPKRKTPLMSS
SLSNVVMNPPWNVPTTLTRQDIIPKVIQDPGYLQRHGYTVLSDWTESAQPIDPSMIDWPM
VSASNFPYRLRQAPGDSNSLGRYKFNMPNTDAIYLHDTPNHNLFQRDIRALSSGCVRVNK
ASELAALLLQDAGWNNARISSTLEQGNTTYVAVRQRVPVNFYYLTAWVADDGKPQFRTDI
YNYDDTVKTGALALSKVGLLLQ
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgttgttagtcaaacgaaatacacaaagactgcttctgggggtagccagctcgatttgg
ctgggtagtctgttgacttcgttttccgctcaggcggcttcgtctactgcaccgggcagt
gcagtgtcattggccgcgtcaaaaagtcatacttctgttaccgctggtttgcctgccggt
atttcacctcattatctcggcgaattgaccgcgctttatacgcgccagcacatgcaaccg
atgtggaacgacagccacgtcgtcaatgcgtttcagcagcaactggcggaagtcgcactt
tccggtattcaaccgcaattcaccacctgggtcacctggttgaccgacccgaaattaaac
ggttttgcccgcgatgtggtgttgtcggacgccatgctcgggtacatgcagtttgttgcc
ggggtggagaaaaatggcaacagttggttgtacagcagcgttccctataagctggccatg
ccatcggcggagatgattgaacagtggcagcgggcggttgcatcgggcaatgggctagcg
tttgttgcgtcgctggcgcctcgccattcccagtatgcaaaaatgcacgacgcgttgaaa
aacatgctgacggacaaccgcccctggccgaaactcatgctggcggactcattgcgtccc
ggtgatgaaagcaacgcgttaccggtattaaaagagattctgctgcgaaccggcatgttg
aatcaggatggtagcgcgatgccgttgtttaatgaggcgtcgtcaggtaatacatcgccg
ttgcgttatgaaggggatgttgtggacgcggtgaaacgcttccagcactcgcaagggctg
caggatgacggcgtgatcggtaaacggacccgcgactggctcaatgtctcttcgcagatg
cgtgctacgttgctggcgttgaatatccagcgcctgcggctggtgccggacaaggtcagc
agcggcatcgtggtcaacattcccaactactcgctcagttactatcagaatggcgcggag
attttgtcgtcaaaggtgattgtcggtcagcctaaacgcaagacgccgttgatgagcagt
tcgctgagcaatgtggtgatgaatccgccgtggaacgtgcccaccacgcttacccgtcag
gacatcattcctaaggtgattcaggatccggggtatctgcagcgccacggttataccgta
ttgtcagactggaccgaaagcgcccagccgattgatccttcgatgatcgattggccgatg
gtttcggccagcaacttcccgtatcgcctgcgtcaggcgccgggggacagcaattcgctg
gggcgttacaagttcaatatgccgaatacggacgccatctacctgcatgacacgcctaac
cacaatttgtttcagagagatatccgggcgctgagttcgggatgtgtgcgcgttaacaag
gcgtcggaattggcggcattgttattgcaggatgccggctggaacaatgcccgtatttcg
tcaacccttgagcagggcaacaccacttatgtggcggtgcgccaaagagtaccggtgaat
ttttactacctgactgcctgggtggcagacgatggcaagccgcagttccgcacagatatt
tacaattatgatgatacggtgaaaaccggcgcgctggctttgtctaaggttggattatta
ttacagtaa
DBGET
integrated database retrieval system
