Dickeya fangzhongdai ND14b: LH89_21870
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Entry
LH89_21870 CDS
T03347
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ced
Dickeya fangzhongdai ND14b
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ced03016
]
LH89_21870
Enzymes [BR:
ced01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LH89_21870
Transfer RNA biogenesis [BR:
ced03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LH89_21870
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AIR71729
LinkDB
All DBs
Position
complement(4950072..4952003)
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGIVKATDKGFGFLEADAQKSYFIPPPHMKKVMHGDRI
IATLHTEKEREIAEPETLVEPFLTRFVGRVQKKDDRLSIVPDHPLLKDAIPCRPARGVEQ
DFKEGDWAVAEMRRHPLKGDRGFFADLTQYITTGDDPLAPWWVTLSRHNLERVAPDADAA
DLDDGQLEREDLTGLDFVTIDSASTEDMDDALYVQDNGDGTLDMTVAIADPTAYVRADSE
LDAIARQRAFTNYLPGFNIPMLPRHLSDDICSLRPNERRPVLACRMTIAADGALSQIRFF
AAWIESRAKLVYDEVSDWLEQQGDWQPESDNIAGQIRLLHRVCQARSAWRTTHALVFRDR
PDYRFLLGENGEVLDIVTEPRRIANRIVEEAMIAANVCAAQVLRDELGFGIYNVHNGFDP
VSIDQAVAVLESNGIQADAQQLLTLDGFCILRRELDAQPTQFLDSRIRRFQTFAEISTAP
GPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIITHTPAEKPQDEVTLQLAERRRLNRMA
ERDVSDWLYARFLKGKAGTDARFSAEIIDVNRGGLRVRLLDNGATAFIPASFIHAVRDEL
VCSQDTGIVTVKGEPVYRQSDTLTVMLTEVRLETRSIIAKPAA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaatccgctgcttgcgcagcttaaacagcaactccactctcagacgcca
cgagcggaaggcatcgtcaaagccaccgacaaaggattcggttttcttgaagccgacgcg
cagaagagctatttcatcccgccgccgcacatgaagaaagtgatgcacggcgaccgtatc
atcgccacgctgcataccgagaaagaacgtgaaatcgccgagccggaaacgctggtggaa
ccgttcctgacccgttttgtcggtcgggtgcagaaaaaagacgaccgtctgtccatcgtg
ccggaccatccgctgctgaaagacgccattccctgccgtcctgcgcgtggagtcgagcaa
gactttaaagaaggcgactgggcggtagcggaaatgcgccgccatccgctgaaaggcgac
cgtggcttttttgccgatctgacgcagtacattactaccggcgacgacccgctggcgccc
tggtgggtgacgctgtcgcgccataatctggagcgcgtcgcgccggacgcggacgcggcc
gatctcgacgacggtcagcttgaacgcgaagacctgaccggactggacttcgtcaccatc
gacagcgccagcaccgaagatatggatgacgcgctgtatgtgcaggacaacggcgacggc
acgctggacatgaccgtggcaatcgccgatccgaccgcctacgtgcgcgccgacagcgag
ctggacgccatcgcccgtcagcgcgcattcaccaactacctgcccggcttcaatattccg
atgctgccgcgtcacctgtcggacgacatctgctcgctacgcccgaacgaacgccgcccg
gtgctggcctgccgtatgacgatcgccgccgacggcgcgctgagccagattcgcttcttt
gccgcctggatcgagtcgcgcgccaaactggtgtacgacgaggtgtccgactggctggag
caacagggcgactggcagccggaaagcgataatatcgccggccagatccgcctgctgcat
cgcgtgtgtcaggcccggagcgcctggcgcaccacccacgcactggttttccgcgaccgt
ccggactaccgtttcctgctgggtgaaaacggcgaggtgctggatatcgtcaccgaaccg
cgtcgtatcgccaaccgcatcgtggaagaagcgatgatcgccgccaacgtctgcgcggcg
caggtattgcgcgacgaactgggctttggcatctacaacgtccacaacggtttcgacccg
gtcagcatcgatcaggcggtagcggtactggaaagcaacggtattcaggccgatgcccag
caactgctgacgctggacggtttctgcattctacgccgcgagctggacgcccagccgacc
cagttcctcgacagccgtattcgccgcttccagacatttgcggaaatcagcaccgcgccc
ggcccgcacttcggtctggggctggaggcttacgccacctggacctcgccgatccgtaaa
tacggcgatatggtcaaccaccggttgctgaaagcgatcatcacgcatactccggcggaa
aaaccgcaggatgaagtgacgctgcaactggccgagcgtcgccgtctcaaccggatggcg
gaacgcgacgtcagcgactggctgtacgcccgtttcctgaaaggcaaagccggcaccgac
gcgcgttttagcgccgaaattatcgacgtgaatcgcggcggtctgcgcgtgcggttgctg
gacaatggcgccaccgcctttattcctgcatcgtttattcacgcggtgcgcgacgagctg
gtgtgcagtcaggacaccggcatcgtcacggtgaaaggcgaaccggtctaccgtcagagc
gacaccctgacggtgatgctgaccgaggtgcggctcgaaacccgcagcatcatcgccaaa
ccggcggcctga
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