Dickeya fangzhongdai ND14b: LH89_22105
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Entry
LH89_22105 CDS
T03347
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ced
Dickeya fangzhongdai ND14b
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ced03019
]
LH89_22105
Enzymes [BR:
ced01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LH89_22105
Messenger RNA biogenesis [BR:
ced03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LH89_22105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
T2SSE
nSTAND3
NACHT
PhoH
FtsK_SpoIIIE
AAA_25
CHASE3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AIR71771
LinkDB
All DBs
Position
5003158..5007000
Genome browser
AA seq
1280 aa
AA seq
DB search
MLRDRQRLRRRLQGAMKVGNPQAQVSIAQDISQEIDAARLRVEQRKASLPAIRYPEALPV
SQKREAILSAIRDHQVVIVAGETGSGKTTQLPKMCLELGRGVTGLIGHTQPRRLAARSVA
DRIAAELETPLGSTVGYKVRFNDQVGDNTLVKLMTDGILLAEIQQDRLLMQYDTLIIDEA
HERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPQRFSRHFGNAPIIEVSGRTYPVDVR
YRPVVEEAQDSDRDQLQAILDAVDELCREGPGDILVFMSGEREIRDTADALSKQDLPHTE
ILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVIDPGTARISRYSYRTK
VQRLPIEPVSQASANQRKGRCGRVAAGICIRLYSEQDFLSRPAFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELSALQSSDDGHYRLTPQGRQLAQLPIDP
RLARMVLEARQTSCVREVMIITAALSIQDPRERPIEKKQAAEEKHRRFTDKESDFLAFVK
LWDYLQEQQKALSSSQFRKLCRSDYLNYLRVREWQDIYTQLRQVVKELGFPVNSEPADYR
SLHGALLTGLLSHIGQKDVEKQEFSGARNTRFAIFPGSGLFKKPPKWTIVAELVETSRLW
GRIAARIEPEWVEPLAQHLIKRSYSEPHWEKAQGAVMAQEKVTLYGLPLVAARKVNYGAI
DPVVSRELFIRHALVEGDWQTQHAFFRANQKLRLEVEELENKSRRRDILVDDETLFAFYD
QRLPHDVVSSRHFDNWWKQASKTDPDQLNFEKAMLIKDGAERVSALDYPNHWQQGELRLR
LTYQFEPGADADGVTVHIPLPVLNQVKEDGFEWQIPGLRRDVVVALIKSLPKPIRRNFVP
APNYAEAFLARVTPLEKGLLEALERELRLMTGVTVDREAWQWDQVADHLKMTFRVEDEKS
RTLREGKNLRALKDQLQEKVQQTLSAVADDGIEQRDLHIWSFGDLPERYEQKRGGYAVKA
YPALVDEKDSVAIRLFDSPHQQQQMMWRGQRRLLLLNIPSPIKYLHEKLPNKAKLGLYFN
PYGKVLELIDDCIACGVDKLMAVAGGPVWQEDAFHQLHERVRAELNDTVVDIAQQVEQIL
TTVFSINKRLKGRVDMALALALSDIKTQMSGLVFRGFVTDNGWKRLPDVLRYLQAIERRL
DKLAQDVHRDRAQMLKVEQVQQAWQQWLNKLPPERREDDDVKAIRWMIEELRVSYFAQQL
GTPYPVSDKRILQAIAQIEG
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgaccggcaacgcctgcgccgccgtttgcaaggcgcgatgaaagtgggaaat
ccgcaggctcaggtttcgattgcgcaggacatcagccaggaaatcgacgccgcgcggctg
cgggtggagcagcgcaaggcgtcgctgccggcgatacgttacccggaagccttgccggtt
agccagaagcgcgaggcgatcctcagcgcgatccgtgaccatcaggtggtgatcgtcgcc
ggggaaaccggttccggcaaaaccactcagttgccgaagatgtgtctggagttgggacgc
ggcgtcaccgggctgattggtcatactcagccgcgccggctggcggcccgcagcgtggcg
gaccgcatcgctgcggagctggagacgccgcttggcagcacggtgggttacaaggtgcga
ttcaacgatcaggtcggcgacaacacgctggtcaaactgatgacggacggtatcctgctg
gcggagattcagcaggatcggctgctgatgcagtacgacacgctgatcatcgatgaggcg
cacgaacgcagcctcaacattgactttattctcggttacctcaagcaattgctgcccaga
cggccggacctcaaggtgatcatcacctccgccaccatcgacccgcagcgtttttcacgt
cacttcggcaatgcgccgattattgaggtgtccggaaggacgtatccggtggatgtccgc
taccggccggtggtggaagaggcgcaggacagcgatcgcgaccagttgcaggcgattctg
gatgcggtggacgaactgtgtcgtgaagggccgggcgatattctggtgttcatgagcggc
gagcgggaaatccgcgataccgccgacgcgctgagcaagcaggacctgccgcataccgag
attttgccgctgtacgcgcggctttccaatcaggaacagaaccgggtgttccagtctcac
cacggacggcgcatcgtgctggcgaccaacgtggcggaaacctcgctgacggtgccgggc
attcgttacgtgatcgaccccggcaccgcacgcatcagccgctacagctatcgcaccaag
gtgcaacggctgccgatagagccggtgtcgcaggcttccgccaaccagcgtaaagggcgc
tgcggccgtgtggcggcgggcatctgtatccggctttattccgagcaggattttctctcc
cggccggcgtttaccgacccggagattttgcgcaccaacctggcgtcggtcattttgcag
atgacggcgttggggctgggcgatatcgcggcgtttccatttgtcgaagcgccggataag
cgcaacattcaggatggggtgcggctgctggaagaactgagcgcgctccagagcagcgac
gacggccactaccgcttgacgccgcaggggcgccagctggcgcagttgcctatcgacccg
cgactggctcgcatggtgctggaagcgcgccagaccagctgtgtgcgcgaggtgatgatt
atcaccgccgcgttgtcgattcaggatccgcgcgagcgtccgatagagaaaaagcaggcg
gcggaggagaaacaccgtcgtttcaccgacaaagagtccgattttctggccttcgtcaaa
ctgtgggattacctgcaagagcagcagaaagcgctgtcgtccagccagtttcgcaaactg
tgccgcagcgattacctcaactacctgcgggtgcgggaatggcaggatatctacacccag
ttgcgtcaggtggtaaaagaactgggctttccggttaacagcgaaccggcggattaccgt
agtttgcacggcgcgttgctgaccgggttgttgtcccacatcggacaaaaagacgttgaa
aagcaggagttcagcggcgcgcgtaacacccgtttcgctattttccccggttctggtctg
ttcaaaaaaccgccgaagtggaccatcgtggcggaactggtggaaaccagccgcttgtgg
gggcgcatcgccgcgcggatcgaaccggaatgggttgaaccgctggcgcagcacctgatc
aaacgcagctacagcgagccgcactgggagaaagcgcagggcgcggtgatggcgcaggaa
aaggtcacgctgtacggtctgccgctggtggcggcccgcaaggtcaattacggcgccatc
gacccggtggtgtcgcgcgagctgttcattcgccatgcgctggtggaaggcgactggcag
acccagcatgcgtttttccgcgccaatcaaaaactgcgtttggaagtggaagaactggag
aacaagtcccgccgccgcgacattctggtggatgacgagacgctgtttgcgttctacgac
cagcgccttcctcatgacgtggtgtcgagccgtcatttcgacaactggtggaagcaggcg
tcgaaaaccgacccggatcagctgaatttcgagaaggccatgctgatcaaagacggggcg
gagcgcgtcagcgcactggactacccgaaccactggcagcagggcgagctgcgtttgcgg
ctcacctatcagttcgagccgggagcggacgccgacggcgtcaccgtgcatatcccgctg
ccggtattgaatcaggtcaaagaggacggattcgaatggcagatcccggggctgcgccgt
gacgtggtggtggcgctgatcaaatcgctgccaaaaccgatacggcgtaacttcgtgccg
gcgcccaactatgccgaagcgtttctggcgcgggtgacgccgctggagaaagggctgctg
gaggcgctggagcgcgagctgcggctgatgaccggcgtgacggtcgatcgtgaagcctgg
cagtgggatcaggtggccgatcacctgaaaatgaccttccgggtggaggacgagaaaagc
cgaacgctgcgggaaggcaagaatctgcgggcgctgaaagatcagttgcaggagaaggtg
cagcaaacgctgtcggcggtggcggatgacggcatcgaacagcgtgatctacacatctgg
agttttggcgatttgccggagcgttacgagcagaaacgcggcggctacgcggtaaaagcc
tatccggcgctggtggacgagaaagacagcgtggcgattcgtctgtttgattcgccgcac
cagcagcaacagatgatgtggcgcggtcagcgccgtctgctgttgctgaatattccctct
cccatcaagtatctgcatgaaaagctgcctaacaaggctaagctggggctgtatttcaac
ccgtacggcaaggtactggagctgatcgacgactgcatcgcctgcggcgtggacaagttg
atggcggtagcgggcggcccggtgtggcaggaagacgcgttccaccagttgcatgagcgg
gtacgcgcggaactgaatgacacggtggtggatatcgcccaacaggtggagcagattctg
accacggtcttctcgatcaacaaacggctcaaaggccgggtggatatggcgctggcgctg
gccttgagcgacatcaagacgcagatgagcgggctggtgttccgcggcttcgtcactgac
aacggctggaagcggctgccggatgtgctgcggtatctgcaggccatcgagcgtcggctg
gataaactggcgcaggacgtacaccgcgaccgcgcgcaaatgctaaaagtggagcaggta
cagcaggcctggcagcagtggctgaacaagctgccgccggaacggcgtgaagatgacgac
gtgaaagccattcgctggatgatcgaagaactgcgcgtcagctacttcgctcagcaactg
ggcacgccttatcctgtttccgataaacgtattttgcaggcgatagcacagattgagggg
taa
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