Corynebacterium endometrii: CENDO_06630
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Entry
CENDO_06630 CDS
T06552
Symbol
hrpB2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cee
Corynebacterium endometrii
Brite
KEGG Orthology (KO) [BR:
cee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cee03019
]
CENDO_06630 (hrpB2)
Enzymes [BR:
cee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CENDO_06630 (hrpB2)
Messenger RNA biogenesis [BR:
cee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CENDO_06630 (hrpB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
APHB_HrpA
ResIII
NACHT
SLFN-g3_helicase
T2SSE
AAA_25
nSTAND_NTPase5
PhoH
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QCB28600
UniProt:
A0A4P7QGL1
LinkDB
All DBs
Position
1447769..1451683
Genome browser
AA seq
1304 aa
AA seq
DB search
MTKDNQQSLGPIRASLIRELDGVPLSSVRPFKRRLRKARSPKALSAIGADIKEAKELVQA
IDAGVPSISYPDSLPVSARKDDIAEAIANHQVVIIAGETGSGKTTQIPKICLELGRGRRG
LIGHTQPRRLAARTVAERIADELGQSIGDSVGYAIRFDDQVSKNTAVKLMTDGILLAEMQ
RDRFLNAYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIITSATIDPQRFARHFSD
AAGTPAPVIEVSGRTYPVEIRYRPLEFEVNGKTVDQDPLDGVCEAIEELMAEGDGDILCF
FAGERDIRDAMEAIEGRKWKGVEVTPLFGRLSNQEQHRVFSPHSGRRIVLSTNIAETSLT
VPGIRYVVDTGTARISRYSTRTKVQRLPIEPISQASANQRSGRCGRVADGIAIRLYSEED
FASRPEFTDPEILRTNLASVILQMISLRLGDITEFPFVQPPESKAIRDGLLLLNELGALK
HEEENGLPVLTRIGKDIARIPVDPRMARMLVEGNSSGCLDDVLIIVASMTIQDVRERPLE
FQAQADQAHARFKDKSSDFIAMLKLWDYIKDSRDEKSGNAFRKQMKAEYLHYMRIREWFD
LVRQLRDVVKQLGWADRHHAANERDSDAIHQALLSGLLSNIGVRDGNSKEFHGARNTRFM
VFPGSALSKKPPEFIMAAELVETSRLWARDVAAIDPAWVEKLAANLLKHNYSDPIWSRKR
SSALVTQKSTLYGVTVVADRQVPYHRVDAVAARDMFIREALINGDWDTHHHFFHDNKAKL
EHASEYEDKARKRGLVVDEDVLFDFYDSRIPQKITTGRHFDSWWKKARKQTPDLLDFDPD
KLINDEDEQVTESAFPDRWLKGSIDYDLSYRFEPGHPMDGVTIMVPVPLLAGMDSEGFDW
LVPGLREELVTELIRSLPKALRRTVVPATNFAERALPMLLPYEGSITQQLAEVLRELGGA
GINSGDFNPSSLPPHLKMNYAAVDKRGKVIDSDRDLAALIERQAGHIKSSVSRVGRDKES
KAVKEWTAENLGAIEEQVTTVVDGHEVAAFPALVATKDGVALKVHPTKAAADAAMVTTTL
TLLMREVSVNSSQMVKGLPLQQRVAIDSYPHGGAEGLVNDARIAAIRDLMMEAGGPVRDP
QAFEELKQKVKPGVPGAVRRAVVGIAPALVEYANVAAELKKWTGPAIDDMHKQLEFLLPK
NAITMHGMIHLQHLPRYIKAMNIRLEEMGIDPDRDADRQAEVEEAEAYLANKLRNLPAGR
EKTREVKEIKWMIQELRVSLFAQRLGTARPVSLRRVQKAVDKLR
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgactaaagataatcagcaatccctgggccctatccgcgcatcgctcatacgcgaactg
gatggcgtaccgctttcgtctgtgcgccccttcaaacgcaggcttcgcaaggctcgttct
cccaaggccttatctgccatcggggccgatattaaagaggccaaagagcttgtccaagca
atcgacgctggcgtgccgagtatttcctacccggattccctgccggtttctgctcgtaag
gacgatattgcagaggcaatcgctaaccatcaggtagtgatcatcgcgggtgagaccggg
tcgggcaagaccacccagattccaaaaatttgcctggaattggggcgcggccgccgtggc
ctcattggtcacactcagccgcgccgcctagccgcgcgtaccgttgcggaacgcatcgcc
gatgaacttgggcaaagcatcggcgattccgtgggctatgctatccgattcgatgatcaa
gtatccaagaatactgcggtcaagctcatgacggacggtatcctgcttgcggaaatgcag
cgcgataggttcctcaatgcctatgacaccatcatcatcgacgaagcccacgagcgttcc
ctcaacatcgatttcctgctgggctatctcaagcgcttgctgcccaagcgcccagattta
aaggttattatcacctcggccaccattgatccccagcgtttcgcccggcatttttccgac
gccgccggcacccccgccccggtcatcgaggtttcgggccgcacctatcctgtcgagata
cggtaccgcccgttggaatttgaggtcaacggcaagacggtggatcaggaccccctggat
ggcgtgtgcgaggccatcgaggaactgatggccgaaggcgatggtgacatcctctgcttc
ttcgcgggagagcgtgacatccgcgacgcgatggaggccatcgaggggcgcaagtggaag
ggcgtggaggtcactcccctgtttggccgcctgtccaaccaggaacagcaccgagtcttt
agtccccactccggcaggcgcatcgtcttgtctaccaatatcgccgaaacgtcgctgacc
gttcccggcattcgttacgtggtggacacgggtaccgcgcgtatttcgcggtattccacc
cgtaccaaggtccaacggctgcccatcgagcctatttcccaggccagcgccaatcagcgc
tccggccgttgcggccgtgtggccgatggcattgctatccgcctctattccgaggaagac
ttcgcatcccgccccgaattcacggatccggaaattctccgcacaaatttggcgagcgtt
attttgcagatgatctccttgcgcctgggggacatcacggaattccccttcgttcagccc
ccggaaagcaaggcgatccgtgatggactccttctcctcaacgagcttggcgccctaaag
cacgaggaagaaaacgggctgcccgtgctcacccgcatcggtaaggatattgcgcgaatc
ccggtcgatcctcgcatggcccgaatgctggtcgagggaaattcctccggttgcctcgac
gacgtgctcatcatcgtggcctccatgaccattcaggatgtgcgcgaacggcctttagag
ttccaggcccaagcggaccaggcccacgcccggttcaaggataagtcctccgatttcatc
gccatgctcaagttgtgggattacatcaaggactcccgcgatgagaagtccggcaatgcg
ttccgcaagcagatgaaggccgagtacctccactacatgcgcatacgcgagtggttcgat
ctggttcgtcagttgcgcgatgtggtcaagcagctgggctgggcggatcgccaccacgcg
gccaacgagcgtgactcggacgccatccaccaggccctgctctccgggctcttatccaat
attggtgtgcgagatggcaattccaaggaattccatggggcccgcaacactcgctttatg
gtgtttccgggttccgcgctgtctaagaaaccaccggaattcatcatggcggccgaattg
gttgagacctcgcgcctgtgggcgcgagacgtcgccgcgattgatcccgcctgggtggag
aagttggcggcgaacctgctcaagcacaattattcagatcccatctggtcacgtaagcgt
tcctccgccctggtgacccagaagtccacgctctacggcgtgaccgtcgtcgcagaccgc
caggttccgtaccatcgggtcgatgccgtggcggcccgtgacatgttcatccgtgaagcg
cttatcaatggcgattgggatacgcatcatcacttcttccatgacaacaaggcgaagctc
gaacacgcctccgagtatgaagacaaagcacgcaaacgcggcctagtggtcgacgaggac
gtcctcttcgatttctatgattcacggatcccgcaaaagatcaccacaggccgccatttc
gattcgtggtggaagaaggcgcgtaagcaaaccccagatctgcttgacttcgatccggat
aagctcatcaatgatgaggacgaacaggtaacggaatccgccttcccggataggtggctt
aaaggctccatcgactacgacttgagctatcgcttcgagcccggacacccgatggatggc
gtcaccatcatggtgccggtaccgctcctggcggggatggattccgagggctttgattgg
ttggttcccggcctgcgcgaggagctggtgacggagcttatccgttcgctcccgaaggcg
ctgcgccgcacggtagtccccgccaccaatttcgcagagcgtgccctgccaatgctcctg
ccgtacgagggcagcattacccagcagttggcggaagttctccgcgagctcggcggcgca
gggatcaactcgggcgattttaatccttccagccttccccctcacttgaagatgaactac
gctgccgtggacaaacgcggcaaggtaattgattccgaccgtgacctcgcagcactgatt
gagcgccaagcgggccacatcaagtcttccgtctcccgcgtcggccgcgacaaggaatcc
aaggccgtaaaggaatggacggcggagaacctgggcgccatcgaagagcaggtgacgacc
gtcgtggatggccacgaggtcgccgcgttccccgccctcgttgctaccaaagacggtgtt
gcgctcaaggtccatcccacgaaggccgccgccgacgccgcaatggtcaccaccacactg
accctgctgatgcgagaggtttcagtcaattcatcgcagatggtaaagggactccctctc
cagcagcgcgtggctatcgattcctatccacatggcggcgccgaggggttagtcaacgat
gcccgcattgcagcgattcgcgatctcatgatggaggccggtgggcccgtccgagacccc
caggctttcgaggaactaaagcaaaaggtaaaacctggcgtcccgggcgccgtgcgccgc
gccgtggtgggcatcgcccccgctttggtggagtacgccaacgtcgccgccgagctcaag
aagtggaccggccctgcgattgatgatatgcacaagcaattagaatttttactgcctaaa
aacgccatcactatgcacgggatgattcatttgcagcacctgccgcgctacatcaaggcg
atgaatatccgccttgaggaaatggggatagatccggatagagacgctgaccggcaggcc
gaggtggaagaagcggaagcttacctcgccaacaagctgcgcaatttgcctgctggaagg
gaaaagacgcgtgaggtaaaggaaatcaaatggatgattcaggaactgcgcgtgtccctc
tttgcccagcgccttgggaccgcgcggccggtatccctgcgcagggtacaaaaggcggtc
gacaagctgcgttga
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