Cyanobacterium endosymbiont of Epithemia clementina: P3F56_04675
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Entry
P3F56_04675 CDS
T09382
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ceec
Cyanobacterium endosymbiont of Epithemia clementina
Pathway
ceec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ceec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P3F56_04675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceec03019
]
P3F56_04675
03009 Ribosome biogenesis [BR:
ceec03009
]
P3F56_04675
Enzymes [BR:
ceec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P3F56_04675
Messenger RNA biogenesis [BR:
ceec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P3F56_04675
Ribosome biogenesis [BR:
ceec03009
]
Prokaryotic type
rRNA processing factors
P3F56_04675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF2752
Motif
Other DBs
NCBI-ProteinID:
WGT68344
LinkDB
All DBs
Position
complement(1424712..1426694)
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AA seq
660 aa
AA seq
DB search
MPKQIVIAEQHHIAAVFWEDQIQELVVATGNQQVSDIYLGVVENVIPGIDAAFVNIGDAE
RNGFIHVTDLGPLRLKRSAGAITELLTPQQKVLVQVMKEPTGNKGPRLTGNITLPGRYLV
LMPYGRGVNLSRRIKNDDERSRLRALAILIKPAGMGLLVRTEAEGKAEEAIMEDLEFLQR
QWESIQVQATSTRPPSLLNRDDDFIQRVLRDMYSAEVNRIVVDSQAGVKRVKQHLMNWSG
GRSPEGVLIDHHREHLGVLDYFRVNAAIREALKPRVDLPSGGYVIIEPTEALTVVDVNSG
SFTRSATARETVLWTNSEAATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKAL
KSDKARPQIAQLSELGLVELTRKRQGKNIYELFGQPCPSCGGLGHMIRLPGQSELIPLET
VTVASSSPVVKPVEKSVEKPEILGESGFEDEIHQTSSQLELLHHPSYQEQGNAPNTTRRR
RRRQSQPQFKDESTTKMVPNLVVKESDYLGEIEAEPRKERGHRHLRREEILMEKVSVEMT
PLEQDLYALMGVSPLVCLDREFKDPKSVLVSVKFPEHSANMSNTQEIREEQEMQEVKEEP
EIPSGDTSFVIPQSIPLEVSEFSDNEEKTDDKAASTKLSESDSERPVIRRRRRRSSAKEA
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagcaaattgttatcgcagagcaacaccacattgctgctgttttctgggaagat
caaattcaagagctagtggttgccactggcaaccaacaagttagcgacatttatttagga
gtagtcgaaaatgtaattccaggcattgatgcagcatttgtcaatattggggatgcagaa
cgcaatgggtttattcatgtcaccgatttaggtcctcttcgcttaaaaagaagtgcggga
gccattacagaattgttgactcctcaacaaaaggtgttggttcaggtaatgaaagaacct
actggcaataagggtccacgactcacagggaatattacattgccaggccggtacttagtc
ttaatgccctatggtcgaggggttaacctttctagaagaattaaaaatgatgatgaacgt
agtcgcctacgtgctttagctattttgattaaaccagcaggaatggggttacttgttcgg
acagaagccgaggggaaagctgaagaagccattatggaagacttagagtttctccagcga
caatgggaatctattcaagttcaggctacttcaacccgtcctccttctctactcaaccgt
gatgacgattttattcaacgggtgttacgggatatgtatagtgcagaggtaaaccgcatt
gttgtagattcccaggcaggggtaaaacgagtaaaacagcacttaatgaactggagtggt
ggccgttctcctgaaggagtgttgattgatcatcaccgcgaacatcttggagttttagat
tattttcgcgttaatgccgcgattcgagaagcgcttaaacctagggttgatttaccttct
ggcggttatgtcatcattgaacccaccgaagcgttgacagttgttgatgttaactctggt
tcatttactcgttcagcaacagccagagaaacggttctgtggactaatagtgaagcagcc
acagaaattgctcgtcaattgcgtctacgtaatattggaggggtaatcattgtagacttt
atcgatatggactcacggcgcgatcaacttaagctattagaacatttcaataaagccctc
aaatctgataaagctagacctcaaattgcacaactctctgaattaggtttagttgaactg
actcgaaaacgtcaaggcaaaaatatttacgaattatttggtcaaccctgtcccagttgt
ggcggtttaggacatatgattcgccttccaggacaatctgaattgattcctttagaaacg
gttactgtagcttcttcttcccctgttgtaaaaccggtggaaaaatcggtagaaaagcct
gaaattcttggagaatctggttttgaagatgaaatccatcagacctccagtcaactggaa
ttgcttcaccatccaagctatcaagaacagggtaatgcccccaataccactcgtcgtcgc
cgtcgccgtcaatctcaacctcaattcaaggatgagtcaacaactaaaatggttcccaat
cttgtggtaaaagagagtgactatttaggagaaatagaagctgaacccaggaaagaacga
gggcataggcatttacgccgagaagaaatactcatggaaaaggtatctgtggaaatgacc
cctttagaacaagacctatatgctttaatgggagtttctcctctagtgtgtcttgatcgt
gagtttaaagaccctaagtctgtattagtatccgttaagtttcctgaacattcagcaaat
atgtcgaacacacaagaaataagagaggaacaagagatgcaagaggtaaaagaggaacca
gagattccttctggagacacatcatttgttattcctcaatctattccccttgaggtgtct
gagttttctgataatgaggagaagacagatgataaagcagcatcaacaaaactatcagaa
agtgactctgaacgccctgttattcgtcgtcgtcgtcgtcgttcttccgccaaagaagct
tga
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