Cyanobacterium endosymbiont of Epithemia clementina: P3F56_08385
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Entry
P3F56_08385 CDS
T09382
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ceec
Cyanobacterium endosymbiont of Epithemia clementina
Pathway
ceec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ceec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P3F56_08385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceec03019
]
P3F56_08385
03009 Ribosome biogenesis [BR:
ceec03009
]
P3F56_08385
Enzymes [BR:
ceec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P3F56_08385
Messenger RNA biogenesis [BR:
ceec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P3F56_08385
Ribosome biogenesis [BR:
ceec03009
]
Prokaryotic type
rRNA helicases
P3F56_08385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
WGT67221
LinkDB
All DBs
Position
complement(2498160..2499602)
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AA seq
480 aa
AA seq
DB search
MTISFNSLGLSDNRVNKLETLGLTSPTEIQCKAIPLILEGHDILGQSQTGTGKTAAYSLP
IMEQIDINDSNIQALILTPTRELAQQVALAIKDFSTERRLYILTVYGGQSIDRQIRSLQR
GVQIVVGTPGRVIDLLDRKKLVLDNLKWAVLDEADEMLSMGFIDDVKKILRQTPDQRNTA
CFSATMPREIRELVNQFLRSPVTVTVDQPQAAPDKIEQHLYGVPRGWSKLKALQPILEIE
VPETAIVFVRTKQTASELTSKLQEAGQSVDEYHGNLSQSQRERLVHRFRDGKIRIVVATD
IAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKKGTAISLVEAIDRRMVRQIERR
IRQRIELCSIPNRSQVEAKRLEKLQKQIQDSLAGERMASFLPIVRELSDEYDPQAIAAAA
LQMVYDQDCPNWMKTDWEVPEAGISKPIVKSKNRKDNSKPRRNNSGKKLDRKTVGHHRGR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaccatttcttttaatagcttaggactctctgataaccgtgttaataaattagaaacc
ctaggtttgacgagtccaacagagattcaatgtaaggcaattcctttaattttggaaggc
catgacattctaggacaatctcagacaggaacagggaagacggcagcttattccttgccc
attatggagcagattgatataaacgattccaacatacaggcacttattctaaccccaacc
cgtgaacttgcacaacaggttgctcttgctattaaagacttttctactgaacgccgactc
tatattttgactgtttatgggggtcaatcgattgataggcaaattcggagtttacaacga
ggtgtccaaattgttgttgggactccaggaagggttatcgacttattagatcgcaaaaag
ctggttttagataatctaaaatgggctgttctcgatgaagccgatgaaatgctcagcatg
ggctttatcgatgatgtgaagaaaattctaagacaaacccccgaccaacgtaacactgct
tgtttctcagcaactatgccccgtgaaatccgagaattagttaaccagtttctcagatcc
cctgttacggtgactgtagaccagcctcaagctgcacctgataaaattgagcaacatctt
tatggtgttcctcgcggttggtcaaaactcaaggcgttacaaccaattttagaaattgaa
gtccctgaaacagccattgtttttgttcggactaaacagacagcttctgaacttaccagc
aagttacaagaagccggacaaagtgttgatgaataccatggtaatctcagtcagtcccaa
cgagaacggttggtccatcgatttcgagatggtaaaattaggattgttgtggctacggat
attgcggcaagagggctagacgttgagaatttaagccacgttattaactacgatttgcca
gataatgcagaaacttatattcatcggattggacgaacaggccgggcaggaaaaaaaggg
acagcaatatctttagttgaagcaattgaccgccgtatggtacgtcaaattgaacggcga
attcgacagagaatagaattgtgtagtattcctaatcgttctcaagttgaagctaagcga
ctggaaaaactacaaaagcagattcaagattccttggcaggggagcggatggcttcgttt
ttaccaattgtgcgggaacttagcgatgaatatgatccccaggccatagctgctgcggct
ttacagatggtttatgatcaagactgccccaattggatgaagactgactgggaagtccct
gaagcaggaatatctaaaccaattgttaagagtaaaaatcgtaaagacaattccaaacct
cgccgtaataactcagggaaaaaattggatcgtaagacagtcggccatcatagagggcgt
taa
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