Cyanobacterium endosymbiont of Epithemia clementina: P3F56_08445
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Entry
P3F56_08445 CDS
T09382
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ceec
Cyanobacterium endosymbiont of Epithemia clementina
Pathway
ceec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ceec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P3F56_08445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ceec03021
]
P3F56_08445
03400 DNA repair and recombination proteins [BR:
ceec03400
]
P3F56_08445
Enzymes [BR:
ceec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P3F56_08445
Transcription machinery [BR:
ceec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P3F56_08445
DNA repair and recombination proteins [BR:
ceec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P3F56_08445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
WGT67228
LinkDB
All DBs
Position
2519480..2521363
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AA seq
627 aa
AA seq
DB search
MKPQADSQFDYVKINLASPERVRQWGERTLPNGVVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPSKDWECWCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAASVTHVWYLKG
IPSYLSILLDMALRDVEQIVYFNSYVVLDPGNASNLSYKQLLTEDQWIEIEDQIYAEDSE
LQGIEVGIGAEAIQRLLREINLDEVAEKLREEILESKGQKRAKLIKRLRVIDNFIATESR
PEWMVLEVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRALKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLKIYQCGLPREMAIELFQPFVIHRLIRLGLVNNIKAAKKLIIREEPSVWNVLE
EVITGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQSEARLLMLACHNILSPATGRPIVAPSQDMVLGCYYLTAENPKAQKGAGNYFGSFDD
ALKAYEQEKLDLHAYIWLRIGTDEEVVTLKPDKEVLKTEILDDGSLVKHYRERRTREKDG
EILAQFVRTTPGRIIYNKTIRDALVAI
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccacaagcagattcacagtttgactacgttaagataaatttagcctctccagaa
cgcgttcgtcagtggggagaaagaactcttcccaacggtgtggtggtcggagaagttact
aaaccggagaccattaactaccggactctaaaaccagaaatggatggtttattctgtgaa
cgtatttttggaccttccaaagactgggaatgttggtgtggtaagtataagcgggtacgt
caccgaggaattgtctgcgaacggtgtggcgtagaggtaactgaatctcgcgtgcgtcgc
catcgtatgggttttattaaattagcggcatccgttacccacgtttggtatcttaaggga
attccaagttacctgagtatccttttagatatggctttgcgggatgtggaacagattgtt
tattttaactcctatgttgtccttgatccaggtaatgccagtaacttatcctacaaacaa
cttttaaccgaagatcagtggattgagatcgaagaccaaatctacgctgaagactctgaa
ctgcaaggaattgaggtgggaattggtgcagaagctattcaacggttactacgagaaatt
aatttagatgaagtcgctgaaaaactccgagaagaaattctcgaaagtaaagggcaaaaa
cgagccaaattaattaaacggttacgggttattgataacttcattgcgacagaatctaga
ccagaatggatggtattagaagtaattccggtaattcctcctgatttacgccctatggtt
cagctggatgggggtcgctttgccacctccgacctcaatgatctttatcgacgggtgatt
aaccggaataatcgtctcgcccgtttgcaggaaattttagcgcctgaaatcattgttcgc
aacgaaaaacgaatgttgcaagaagcagttgatgcactaattgataacggacggcgagga
cgtacggttgtcggagccaataatcgcgcattaaaatccctctcggatattattgaaggg
aaacaaggtcgctttcgtcaaaacctcttaggaaaacgagtagactactctggacgatca
gttattgtcgttggtcctaagctaaagatttatcagtgtggcttaccgagagaaatggca
atcgagttgttccaacctttcgtcattcatcgcttgattcgtttagggttagttaataat
attaaggcggctaaaaagcttattattcgtgaagaacctagcgtatggaatgtactggaa
gaagtcattacaggccaccccgtcatgcttaatcgtgcaccaactttacaccgtttaggg
attcaagcttttgagccaattttagtagaaggtcgggcaattcagttacacccgttggtc
tgtccggcatttaacgctgactttgacggcgaccaaatggcagttcatgttcccctttca
ttagaatctcaatctgaagcacgactactaatgttagcctgtcataacattttgtcccct
gcaacaggtaggccgattgtggctccttctcaagatatggtactaggatgttattatctc
actgctgaaaatccaaaagcacaaaaaggagcaggtaactattttggaagttttgatgac
gcgctaaaagcttacgaacaggaaaaattagatttacatgcctatatttggctccgtatt
ggtacagatgaagaagtagtcactctcaaacctgataaagaagttctcaaaacagaaatc
ctagatgatggaagtttagtcaaacattaccgcgaacgtagaacgcgggaaaaggatggg
gaaattctcgctcaatttgttcgtactactccaggtcgaattatctacaacaaaactatt
cgggatgcactggttgccatttaa
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