Corynebacterium efficiens: CE1259
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Entry
CE1259 CDS
T00103
Name
(GenBank) putative cold shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cef
Corynebacterium efficiens
Pathway
cef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CE1259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cef03019
]
CE1259
03009 Ribosome biogenesis [BR:
cef03009
]
CE1259
Enzymes [BR:
cef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CE1259
Messenger RNA biogenesis [BR:
cef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CE1259
Ribosome biogenesis [BR:
cef03009
]
Prokaryotic type
rRNA helicases
CE1259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
UvrA_inter
CMS1
adh_short
DUF6892
Cj1289-like_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAC18069
UniProt:
Q8FQ74
LinkDB
All DBs
Position
1314641..1316851
Genome browser
AA seq
736 aa
AA seq
DB search
MRNTDNVNGDVEQPDNVISSESQETPQGDSAAADFALDTPTNTVEGTAVSEGSEEITRVA
EISEDADSAEAADSASNVINENVNEDSSEDVTQSSHESSSTEASTGFDALGLPQQVLDAV
RKVGFETPSPIQAQTIPVLMDGHDVVGLAQTGTGKTAAFALPVLSRIDKSVRSPQALVLA
PTRELALQVADSFQSFADHLGGLNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLE
KGSLDISGLRFLVLDEADEMLNMGFQEDVERILADTPDDKQVALFSATMPNGIRRLSKQY
LNNPQEISVKSETRTATNITQRFLSVAHRNKMDALTRILEVTEFEAMIMFVRTKHETEEV
AEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNYD
IPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNAPLVEMELPTVDEVNE
YRKVKFADSITEALENPQVALFRTLIKEYAEKNDVPLEDVAAALATQAQAGNDFFLTEQA
ADRDRGRGDRRRDRDFDDRGGRGRDRGDRPSRFDRDDANLATYRIAVGKRQHVRPGAIVG
ALANEGGLNSKDFGRITIAADHTLVELPKDLPQSVLDNLRDTRISGQLINIERDSGGRPP
RRFERDDRGGDRGGRGGFRGDRDDRGGRGGFRGGRDRDDRGGRGGFRGDRDDRGGRGGFR
GGRDRDDRGGRGGWRD
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgagaaataccgataacgtcaacggcgacgtagaacagccggataacgtcatttcgtcg
gaatctcaggaaaccccgcagggtgactcagcagcagctgacttcgctctcgacaccccc
accaacactgttgaaggcaccgctgtgtctgagggtagcgaagagatcaccagggttgcg
gaaatttctgaggacgccgactccgccgaagcagcggacagcgcgagcaatgtaatcaat
gagaatgtgaatgaggactcctcggaagacgtaacccagtcttcacacgagtcatcctct
acggaagcctccaccggcttcgatgcactcggactgccacagcaggttcttgacgctgtg
cgcaaggttggtttcgaaactccttcccccatccaggcacagaccatccccgtcctcatg
gacggacacgatgtggtcggcctcgcacagaccggtaccggtaagaccgcagccttcgcg
ctgccggttctctcccgcatcgacaagtccgtgcgcagcccccaggctctcgtgcttgcc
cccacccgtgagctggcgctccaggtcgctgactccttccagtccttcgccgaccacctc
ggtggtctcaacgtcctgccgatctacggtggacaggcctacggcatccagctgtccggt
ctgcgtcgcggtgcccacatcgtcgtcggcaccccgggtcgtatcatcgaccacctggag
aagggctcactggatatctccggtctgcgcttcctcgtcctcgatgaggccgatgagatg
ctcaacatgggcttccaggaggatgtcgagcgcatcctcgccgacacccctgatgacaag
caggtggcactgttctccgcgaccatgccgaacggcatccgtcgcctgagcaagcagtac
ctgaacaacccgcaggagatctcggtcaagtccgagacccgcaccgccaccaacatcacc
cagcgcttcctgtctgttgcccaccgcaacaagatggacgcactgacccgcatcctcgag
gtcaccgagttcgaggcgatgatcatgttcgtgcgcaccaagcacgagaccgaagaggtc
gccgagaagctgcgtgcccgtggtttctctgcagctgccatcaacggtgacatcgcccag
gcccagcgtgagcgcaccgtcgaccagctcaaggatggccgcctggacatcctggtggcc
accgatgtcgccgcccgtggtctcgacgtcgagcgcatctcccatgtgctcaactacgac
atcccgaacgacaccgagtcctacgtccaccgcatcggccgcaccggccgtgcaggacgt
accggcgaggccatcctgttcgtcaccccacgtgagcgccgtatgctccgctccatcgag
cgggccaccaacgccccactggtggagatggaactgccgaccgtggacgaggtcaacgag
taccgcaaggtcaagttcgccgactccatcaccgaggcactcgagaacccccaggtcgct
ctcttccgcaccctgatcaaggagtatgccgagaagaacgacgtacccctcgaggatgtc
gccgccgcactggccacccaggcacaggccggcaatgacttcttcctcaccgagcaggcc
gctgaccgcgaccgtggccgtggcgaccgccgccgtgaccgcgacttcgacgaccgtggt
ggccgtggccgtgaccgtggcgaccgtccgtcccgcttcgaccgtgacgacgcgaacctg
gccacctaccgcatcgcggtgggcaagcgccagcacgtccgcccgggtgccatcgtcggt
gccctggccaacgagggtggtctgaactccaaggacttcggacgcatcaccatcgcagcc
gaccacaccctggtcgaactgccgaaggatctgccacagagtgtcctggacaacctccgt
gacacccgtatctccggccagctcatcaacatcgaacgcgactccggtggacgtccacca
cgtcgcttcgagcgcgatgaccgtggcggcgaccgcggtggacgcggtggattccgtggt
gaccgtgacgatcgtggtggccgtggtggtttccgcggcggccgtgaccgtgatgatcgc
ggtggacgcggtggattccgtggtgaccgtgacgatcgtggtggccgtggtggtttccgc
ggcggccgtgaccgtgatgatcgcggtggacgcggcggctggagggactag
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