Corynebacterium efficiens: CE1819
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Entry
CE1819 CDS
T00103
Name
(GenBank) putative ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cef
Corynebacterium efficiens
Brite
KEGG Orthology (KO) [BR:
cef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cef03019
]
CE1819
Enzymes [BR:
cef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CE1819
Messenger RNA biogenesis [BR:
cef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CE1819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
ResIII
NACHT
AAA_11
PhoH
TsaE
ABC_tran
AAA_30
T2SSE
AAA_25
Zeta_toxin
AAA_23
TRCF
Motif
Other DBs
NCBI-ProteinID:
BAC18629
UniProt:
Q8FPF9
LinkDB
All DBs
Position
1921216..1925124
Genome browser
AA seq
1302 aa
AA seq
DB search
MTTPENTPTRAELYELLDGVSLTDERSFRRRLQKARSPRALTAIRTDIDKARQRVEARAA
LVPEITYPQSLPVSARREDIAEAISENQVVIIAGETGSGKTTQIPKICLELGRGRRGLIG
HTQPRRLAARTVAERIADELGQGIGETVGYAIRFDDRVSPSTSVKLMTDGILLAEMQRDR
FLNAYDTIIIDEAHERSLNIDFLLGYLRQLLPKRPDLKVIITSATIDPERFATHFADAEG
KPAPIIEVSGRTFPVEIRYRPLEVVQGDKVIDIDPLDGLCDAIEELMAEGPGDILCFFPG
ERDIRDAMEIIEGRRWKGVEVTPLFGRLSNEEQHRVFRPHSGRRIVLSTNIAETSLTVPG
IHYVVDTGTARISRYSVRTKVQRLPIEPISQASANQRSGRCGRVADGIAIRLYSEEDFES
RPEFTDPEILRTNLASVILRMASLRLGDITDFPFVQAPEQRSIRDGLLLLHELGALAEDV
AEDGSPQLTPIGRDLAQIPVDPRMARMLVEAHRLGALHPVMIIVAAMTIQDVRERPLEFQ
AQADQAHARFKEITSDFLSYLKLWEYISDQRDNTSGNAFRKQMKKEFLHYMRIREWWDLV
RQLEQVGLQLGWSAKENVAGTASPDIIHQSLLSGLLSQIGARDGDSREFSGSRGTKFMIF
PGSPLSKKPPQFIMAGQLVETSRLWARDVAKIEPEWVEKIAGPLLKHQYSEPHWSTKRGA
AMAHQKSTLYGVTIIADKVVPYHRVDPAAARDMFIRHALVQGEWTTHHRFFHDNAAKLED
IAELEAKARRRDIIVDEDTLFDFYDSRLPETITTSRHFDSWWKKTSRNQPDLLDFDPEKL
VNADAGVIPEEAFPDRWEKGGLIFDLSYHFEPGHRDDGVTVLIPVPVLGGLDNEGFDWLV
PGVRLDLVTELIRTLPKALRRTVVPAPDFARRALPLLHPYASPLTSQLADALRSLGGSGI
NASDFSPGKLPDHLRITYAAVDKRGKIIDRDKDLTALKERRASQIRASVSRVARTSEQDE
VPSWTRETLGTIDEEIDTTVDGQKVTAFPALVVTPTGVSVKVFPTRAAADASMVTSTLTL
LMREIEVNPKQMLKGLPLQQRVAVDNYPHGGSEGLVADARVAAIRDLMFAHGGAVRTPEE
FEKLLATVKPAVAGEVRRTIVELAPALVRFANITAELEGWTGPAIDDMTAQLEFLLPAHA
ISIHGAQRLRHLPRYLHAMAIRLEEMNRDPDRDADRQDEIQGVEKYLEDRLAKLPSNRRN
TREVRDIRWQIQELRVSLFAQRLGTPKPVSAQRVRKMVDKLR
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgactacacctgagaacactcccacgcgagctgaactgtacgaactcctcgacggggtt
tcgctcaccgatgaacggtctttccgccgtcgactccagaaggcccggtcccccagggca
ctgaccgccatccgcacagacatcgacaaggcccgtcagcgcgttgaggcccgtgctgcc
ctcgtgcccgagatcacctacccgcagtcattgcctgtcagtgcgcgccgggaggatatc
gccgaggcgatcagcgagaaccaggtggtcatcatcgccggtgagaccggttcgggtaaa
accacccagatcccgaagatctgtctcgaactgggacgcgggcgcaggggtcttatcggc
cacacgcagccgcgtcgattagcagcacgcaccgtcgccgagcgcatcgcagatgagctc
ggacagggtatcggcgagaccgtcggctatgccatccgttttgatgaccgtgtgtccccc
tccacctcggtcaagctcatgacggacggcattctgctggcggagatgcagcgcgaccgt
ttcctcaatgcctatgacacgatcatcatcgacgaggcgcacgaacgttccctcaatatc
gatttcctgctggggtacctacgccaactgctgccgaaacgccccgatctcaaggtcatc
atcacctccgcgacgatcgacccggagcgtttcgccacccacttcgccgacgctgagggc
aaaccggcgccgatcatcgaggtctccggacgcacctttcccgtggagatccggtaccgc
ccactcgaggtggtccagggtgacaaggtcatcgacatcgacccgctcgatggactgtgt
gatgccatcgaggaactcatggcggaggggcccggtgacatcctgtgtttcttccccggt
gaacgcgatatccgtgatgccatggagatcattgagggacgcagatggaagggggtggag
gtcacaccgctgtttggccggttgtccaacgaggaacagcaccgtgtgttccgtccccat
tcaggtcgtcggatcgtcctgtccaccaatatcgcggagacgtcactgaccgtcccgggt
atccactatgtcgtggacaccggtaccgcacgcatctcgcggtactcggtacgcaccaag
gtgcagcgactgccgatcgagccgatctcacaggccagcgcgaatcagcggtcgggtcgt
tgtggtcgtgtcgccgacggcatcgccatccgcctgtactccgaggaggatttcgaatcc
cgtccggagttcaccgacccggagatcctgcgcaccaacctggccagtgtcatcctccgg
atggcttcgctgcgtctgggggatatcaccgacttccccttcgtgcaggcacccgagcaa
cgctcgatccgcgatggtctgctgctgctccatgagctcggtgccctcgcggaggacgtg
gccgaggacggttcgccacagctcaccccgatcggccgggacctggcgcagattccggtg
gatccgcgcatggcccgcatgttggtggaggcccaccgcctcggggcgctgcatccggtc
atgatcatcgtggccgccatgaccatccaggatgtccgggaacgccccctggagttccag
gcgcaggcggatcaggcccacgcgcgattcaaggagatcaccagtgatttcctcagctac
ctcaagctgtgggagtacatcagcgaccaacgtgacaacaccagcggaaacgccttccgg
aagcagatgaagaaggaattcctccactacatgcgtatccgcgagtggtgggatctggtc
cgccagctggagcaggtcggcctgcagctggggtggtcggccaaggagaatgtcgccggc
accgccagccccgatatcatccaccagtccctcctgtcgggtctgttgtcacagatcggc
gcccgcgacggtgacagcagggagttttccggttcgcggggcacgaagttcatgatcttc
cccggctcaccgttgtcgaagaagccaccccagttcatcatggcgggacaactggtggag
acctcgcgcctgtgggcccgtgatgtggcgaagatcgaacccgagtgggtcgagaagatc
gccggccccctgttgaaacaccagtattccgaaccgcactggtccaccaagcgcggcgcg
gcgatggcccatcagaagtccacgctctacggtgtcacgatcatcgccgacaaggtggtg
ccctatcaccgggtggatccggcggcagcccgcgacatgttcatccgtcatgccctcgtc
cagggtgagtggaccacccatcaccgcttcttccatgacaacgcggccaaactggaggac
atcgccgagttggaggccaaggcccggcgccgtgacatcatcgtcgacgaggacaccctc
ttcgacttctacgattcccgtctcccggagaccatcaccacctcccggcacttcgattcc
tggtggaagaagacctccagaaaccagccggacctgctggatttcgatccggagaaactg
gtcaatgcggatgcgggggtcatccccgaggaggcattccccgacaggtgggaaaagggc
ggcctgatcttcgacctgagctaccacttcgaaccgggccaccgcgacgatggtgtcacc
gtcctcattccggtgccggttctcggcgggttggacaacgaggggttcgactggctcgtc
cccggcgtccgtctcgacctggtcaccgagctcatccgcaccctgcccaaggctttacga
cgcacggttgtccccgccccggatttcgcccgccgggcgctgcccctactgcacccctat
gcctcccccctgacctcccagctggctgacgcactgcggtcactcggtggcagtggcatc
aatgcgtccgatttctccccgggaaagctacccgaccatctacggatcacctacgccgcg
gtggacaagcgggggaagatcatcgaccgggacaaggatctgaccgcgttgaaggaacga
cgcgcatcacagatccgtgcgtcggtgtcccgggtggcgcgcacctcggagcaggacgag
gttccatcctggaccagggagaccctgggcacgatcgatgaggagatcgacaccacggtg
gacggtcagaaggtcaccgccttccccgccctggtggtgaccccgacaggggtgtcggtc
aaggtgttccccacccgggccgccgccgatgcctccatggtcacctccacgctcacgctg
ttgatgcgggagatcgaggtcaacccgaagcagatgctcaagggacttcccctgcaacag
agagttgcggtggacaactatccgcacggcggttccgagggcctggtcgctgatgcacgc
gtcgcggccatccgtgacctcatgttcgctcatggcggtgcagtgcgtaccccggaggaa
tttgagaagctgttggcgacggtcaagcctgccgtggcgggggaggtgcggcgaacaatt
gtggagctggctccggccctggtgcgcttcgccaacatcactgcggagctggagggatgg
acaggaccggccatcgatgacatgaccgcccagctggagttcctcctgcccgcacatgcc
atcagtatccacggggcccagcgcctgcgtcacctcccccgttatctccatgccatggcc
atacgcctggaggagatgaaccgggatccggaccgggacgctgaccgacaggacgagatc
cagggggtggagaagtatctggaggaccgcctggccaagctgccgagcaatcgccgtaac
acccgtgaggtcagggacatcaggtggcagatccaggagctgcgggtgagtctgttcgcc
cagcgcctgggcacccccaaaccggtgtcggctcagcgcgtgaggaagatggtcgacaaa
ctgcgctga
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