Cellvibrio sp. KY-GH-1: D0C16_02640
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Entry
D0C16_02640 CDS
T06422
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ceg
Cellvibrio sp. KY-GH-1
Pathway
ceg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ceg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0C16_02640 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceg03019
]
D0C16_02640 (rhlE)
Enzymes [BR:
ceg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D0C16_02640 (rhlE)
Messenger RNA biogenesis [BR:
ceg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D0C16_02640 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
PriC
Motif
Other DBs
NCBI-ProteinID:
QEY14965
LinkDB
All DBs
Position
complement(654336..655733)
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AA seq
465 aa
AA seq
DB search
MSFESLGLRADILRAIAEAGYSNPTPIQAQAIPAVLKGGDILAGAQTGTGKTAGFTLPLL
EKLSRVTADKLVKGRRPVRALILTPTRELAAQVHDSVRTYGKYLSLRSTVVFGGVSINPQ
MMNLRGGTDILVATPGRLLDLVNQNAVSLREVEVLVLDEADRMLDMGFIHDIKKVLALLP
KQRQNLLFSATFSDEIKALADKLLNQPSLIEVARRNTASERVTQRVHPVDRNRKRELLSH
LIKQGDWQQVLIFTRTKHGANKLTEQLLDDGIRAAAIHGNKSQGARTKALEDFKRGEIRA
LVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRADAEGIAISLVCIDEDKFLR
DIEKLIKRDIDKQVVPGFEPDPNAKAEPIVLGRRMTIGAGTAKPGKSRAGKPGAAKLALG
QKPKNGNGKKPSGNNQQQRTSKPASASTHRKGPPKPAQQRAQGNS
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaaagtctcggtcttcgggccgatattttgcgtgctattgccgaagccggc
tatagcaatccaacccctatccaagcgcaagctattcccgccgttctaaaaggtggcgat
attctggctggcgcacaaacaggtaccggtaaaactgccggctttactttgcccttactc
gaaaaactaagccgggtaaccgcagacaaactggttaaaggccggcgcccggttcgcgcc
ttgatccttacccctacgcgcgaactggcggctcaggtacacgatagtgtgcgtacttat
ggcaaatacctttcattgcgctcgacagtggtttttggtggcgtcagtatcaatccacaa
atgatgaacttacgcggcggcaccgacattctcgtagccactcccggtcgattgctggat
ctcgtcaatcaaaatgcagtctcactacgtgaagtagaagtattagtgctggacgaggct
gaccgcatgctagacatgggctttatccacgacatcaaaaaagtgttggcacttttacca
aagcagcggcaaaacctgcttttctcggccaccttttccgatgaaattaaagcactggct
gataaattactaaaccaacccagcctgatcgaagttgcgcgtcgcaacactgcgtctgag
cgggtcacccaacgggtacaccccgtggatcgcaatcgcaaacgcgagttgctttcacat
ctcatcaagcaaggtgattggcaacaagtattaatttttactcgtaccaaacacggcgca
aataaattaactgaacaattgctggacgacggtatccgcgcagcggcaattcacggcaat
aaaagtcagggcgcccgcactaaagcactcgaagattttaaacgaggtgaaattcgtgcg
ctggttgctaccgatatcgccgcacgcggtatcgacatcgatcagctgccacacgttgtg
aactatgaattacccaacgtaccggaagattacgtccaccggattggtcgcaccggacgc
gctgatgcggaaggaattgccatctcattagtatgtatcgatgaagataaatttttacgc
gatattgagaaattaattaaacgcgatatcgataagcaagtagttccgggctttgagcca
gaccctaacgcaaaagcagagcctattgtactgggtcgccgtatgacaattggtgcgggc
acagcaaaacccggaaaaagccgcgcaggaaaaccaggtgctgccaaacttgcgctggga
caaaagcccaagaatggcaatggaaaaaagccatccggcaacaaccaacaacaacgcacc
agcaaaccagccagcgcatctacacatcgcaaaggcccgcccaaaccagcgcaacagcgc
gcgcagggtaatagctaa
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