Cellvibrio sp. KY-GH-1: D0C16_04190
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Entry
D0C16_04190 CDS
T06422
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ceg
Cellvibrio sp. KY-GH-1
Pathway
ceg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ceg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0C16_04190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceg03019
]
D0C16_04190
03009 Ribosome biogenesis [BR:
ceg03009
]
D0C16_04190
Enzymes [BR:
ceg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D0C16_04190
Messenger RNA biogenesis [BR:
ceg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D0C16_04190
Ribosome biogenesis [BR:
ceg03009
]
Prokaryotic type
rRNA helicases
D0C16_04190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QEY15244
UniProt:
A0A5J6P863
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All DBs
Position
981401..983266
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AA seq
621 aa
AA seq
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MSEPILFTDLSLSEPVLKAIQAVGYEVPSPIQAAAIPVLLEGGDILGMAQTGTGKTAAFA
LPLLSKLDVKQADPQILVLAPTRELAIQVAEAFQKYAAHIPGFHVLPIYGGQDMTSQLRQ
LKRGVHVVVGTPGRVMDHLRRGSLNLNNLKSLVLDEADEMLRMGFIDDVEWILEHTPTTR
QTALFSATMPREIRKVCDNYLRDAKEIKIASTQSTGDNIEQVYWMVSGTNKLDALTRILE
VEPFDGMIIFVRTKTATVELAEKLEARGYSASALNGDMNQQLRERAIDRLKTGKLDIVIA
TDVAARGIDVERVSHVVNYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPREKRLLYTIE
KATKKPITLMELPSGATVTKHRIDQFTQQITDTLKEQADLSFFNDLLAEYSHANDVSPEE
IASALAFLLQRERPLQVKFTDIKPERNERRDRDDRGGRDRDDRGGRDGGRDRGPREDRPR
RERNDENMDRYRIEVGRNHEARPGDIVGAIANEAGIESRFIGHIKLHDEFSTVDLPAGMS
KDILAKLKKVRVRNRPLEISLDTGPRGGDDFPGRGKPKRDFGPRDGGPREGGYRDGNRDK
PRFNDRDNASKKSGYRPKKFD
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacctattttgtttaccgatttatccctgtccgaacccgtattgaaagccatt
caggccgtgggttacgaagttccatccccaattcaagcggcggcaattccagtattactg
gaaggcggcgatattctgggtatggcacaaactggtaccggtaaaactgcagccttcgcg
ctgccattgctctccaaactggatgtaaaacaagccgatccacaaatcctggtgttggca
cctacccgcgaactcgcgatccaagttgccgaagcctttcaaaaatatgccgcacacatc
cccggcttccacgttctgccaatttatggcggtcaggacatgaccagccagttgcgccaa
ttgaagcgtggcgtacacgtggtagtaggaaccccaggccgcgttatggatcacctgcgc
cgcggcagcttgaacctgaacaatctgaaaagcctggtacttgatgaagccgacgaaatg
ctgcgcatgggctttatcgacgatgttgagtggattctcgaacacactccaacgactcgt
cagactgcacttttctccgccaccatgccgcgcgaaatccgcaaagtgtgcgacaactat
ttgcgcgatgcgaaagaaattaaaatcgccagcacccaatctaccggcgacaatattgaa
caagtttattggatggtgagcggcaccaacaaactggacgcattaactcgcatcctggaa
gttgagccattcgacggcatgattattttcgtgcgcaccaaaactgccaccgttgaattg
gcggaaaaattggaagcgcgcggttattctgcatctgcattgaacggcgacatgaaccag
caattgcgcgaacgcgcgattgaccgtttaaaaactggcaagctcgacatcgttatcgcg
accgacgttgccgcgcgcggtatcgacgtagagcgtgttagccacgttgttaactacgac
ataccttacgacagcgaagcctacgtacatcgtattggccgtaccggtcgtgctggccgc
agcggtaaagcaattctctttgttgccccccgtgaaaagcgtttgctttacaccatcgag
aaggcaactaaaaaaccaattacgttgatggaattgcccagcggtgcaacggttactaaa
caccgtattgatcaattcacccaacaaattactgataccttgaaagaacaagctgatttg
tcgttcttcaacgatttgctggctgaatacagtcatgcaaatgacgtatcacccgaagaa
attgcttctgcccttgccttcctgttgcaacgtgagcgtccgctgcaagttaaatttacg
gatataaaacctgagcgcaacgaacgtcgtgaccgtgatgaccgtggcggacgtgaccgt
gacgatcgcggtggcagagatggtggtcgcgaccgcggcccacgtgaagatcgtccgcgc
cgcgagcgcaacgacgaaaacatggatcgctaccgcattgaagtgggccgcaaccacgag
gcacgccctggtgatatcgttggcgctatcgcaaacgaagcaggtatagaaagccgtttt
atcggtcacattaaattgcatgacgagttctccaccgttgatctgccagcaggcatgtca
aaagacattctcgccaagctgaaaaaagtgcgcgtgcgcaatcgtccactggaaatatct
ttggatactggcccacgtggcggtgatgacttccccggtcgcggcaaaccaaagcgtgac
tttggaccaagagatggtggcccacgtgaaggtggctacagagatggcaaccgcgacaaa
ccgcgctttaatgatcgcgacaatgccagtaaaaaatccggctatcgcccaaagaagttt
gattaa
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