Cellvibrio sp. KY-GH-1: D0C16_05970
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Entry
D0C16_05970 CDS
T06422
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ceg
Cellvibrio sp. KY-GH-1
Pathway
ceg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ceg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D0C16_05970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ceg03400
]
D0C16_05970
Enzymes [BR:
ceg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D0C16_05970
DNA repair and recombination proteins [BR:
ceg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D0C16_05970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_30
Fe-ADH
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QEY15556
UniProt:
A0A5J6P5X1
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All DBs
Position
1379528..1382989
Genome browser
AA seq
1153 aa
AA seq
DB search
MTLSPLAKPPVSMRAGNRQYWGQLYGSAQALAIANAATLYSGLSLIVTADTSSAIRLETE
LRFFAGDANGLPVLQLADWETLPYDTISPHQDIISERLRTLYQLPAVKQGILVVPITTLL
QRLMPQSYLLGNSLMVSVGEQIDTNQLRQNLERAGYRCVDTVYEHGEFAVRGSLMDIYPM
GSDLPYRIDLFDDEIESLRTFDPETQLTIDKVEKIQLLPAKEFPLNKAGINLFKQQWLER
FDVNHKACPVFQDISAGISPPGIEYYLPLFFDACSTLFDYLPQNTQVYALGDIEKSAESF
WVELLRRYESRRVDPLRPLLPPRDIYLAIDELFGHLKNYCRTFVGSTPLDEKEGQINFAT
EATPSLPIRAQADNPLAAIQAFLMEFNGRVLFCAESAGRRETLLELLGRIRIRPAALETW
NEFLASSEKIAITVAPLDQGLLQTDPKLAVIAESQLFGERIQQQRRRKQTQDNADMVVKN
LTELKIGAAVVHIDHGVGRYRGLETITIDNQTNEFLTLEYADEAKLYVPVTNLHLISRYS
GAEDDLAPLHRLGSESWQKARKKAAEQIRDTAAELLEVYARRAARKGFAFPDPKTAYEAF
SASFPFEETPDQQRAIESVLSDMLSNKPMDRLVCGDVGFGKTEVAMRAAFVASHGGKQVA
ILAPTTLLAQQHYESLKDRFAEWPITVEVLSRFRTTKEVNQVLERVAEGKVDIVVGTHKL
LQPDIKFKNLGLLIIDEEHRFGVRQKEQIKSLRAEIDILTLTATPIPRTLNMSMAGIRDL
SIIATPPARRLSVKTFVRTYDEATIKEAILREILRGGQVYYLHNEVDTIEKTARDLQELI
PEARIAVGHGQMRERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANTIIIDRADKFGL
AQLHQLRGRVGRSHHQAYAYLLTPDRRAMTDDAVKRLEAISAAEDLGAGFTLATYDMEIR
GAGELLGEEQSGQIQTIGFSLYMDMLDRAVKAIRQGKQADLEKALSEAIDINLRIPALIP
SDYLPDVHTRLVMYKRLANAQNEEALRELQVEMIDRFGLLPEAIKNLFRVTQIKIRAEAI
GIIKLEANSRGGKVEFTSDTKVDPLQIVKLVQSQPRVYKLEGASQLKFTLDLEATEKRIQ
GVMDLLDYLTPKH
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaccttatcccctttagccaaacctccggtatcaatgcgcgcgggtaatcgccaatac
tggggccaactctatggcagcgcccaagcgctcgcgattgctaacgccgctacactttat
tccgggttaagcctcattgtgactgccgataccagctccgcgattcgcttggaaaccgag
ctacgattttttgcaggagatgcaaacggcttaccagtcttgcaattagcggattgggag
acactcccctacgatactatctcgccgcaccaggatattatctctgaacggctgcgcacc
ctttatcaattacctgctgtaaaacaaggcattttggtggtgccaatcaccactttgttg
cagcgtttgatgccacagtcatatttgctcggtaacagtttgatggtgtcggtcggcgaa
caaattgataccaatcaattgcgccaaaacctggaacgcgccggctaccgctgcgtggat
acggtttatgagcacggtgaatttgccgtgcgcggctcactaatggatatttatcccatg
ggcagtgacctgccctatcggatcgatttatttgacgatgaaattgaaagcctgcgtacc
tttgatcctgaaacccagctcactattgataaagtagaaaaaatccagctattgccagcg
aaggaatttccgctcaacaaagccgggattaatttatttaaacaacaatggctggaacgc
tttgatgttaaccacaaagcttgccccgtcttccaggacattagcgccggtatttcacca
ccgggtatcgaatactacctgccgttattttttgatgcctgcagcacactgtttgattac
ttgccacaaaacactcaggtgtatgcgctgggcgatatcgaaaaatccgcggagagtttc
tgggtggagttattacgccgctacgaaagtcgtcgtgttgacccgctgcgcccgttatta
ccaccaagggatatttatcttgctattgatgagctgttcggccatctaaaaaattattgc
cgcacctttgtaggttcaacaccgctcgacgagaaagaaggacaaatcaacttcgccacc
gaagcaacaccttcgctgccaattcgtgcgcaggcggacaatccgctcgctgcaatccag
gcgtttttaatggaatttaatggccgggttttgttttgcgcggagtccgccggtcgccgc
gaaacattattggagttactcggccgcattcgtattcgccccgccgcgctcgaaacctgg
aacgaatttctggcgagcagcgaaaaaatcgctattaccgttgccccactggatcaaggt
ttattacaaacggaccccaaacttgccgtaattgctgagtcgcaattattcggtgaacgt
atccagcaacagcgccgccgcaagcaaacgcaagacaacgccgatatggtggtgaaaaac
ctcaccgaattaaaaatcggtgcggcagtggtacatatcgatcacggtgttggtcgctat
cgcggtttggaaactatcactattgataatcaaaccaacgaatttctaacactggaatat
gcggacgaagccaagctctatgttccagtcactaacctgcatttgattagtcgttacagt
ggtgctgaggatgatttggcgccgctgcacagactcggtagtgagtcctggcaaaaagca
cgcaaaaaagccgcggagcaaattcgcgatacagcagcggaattactggaagtctatgcg
cgccgtgcggcacgcaaaggttttgcattccccgatcctaaaaccgcgtatgaagcattc
tccgccagttttccatttgaagagacgcctgatcaacaacgcgctattgaatctgtgttg
agcgatatgctctccaataaacctatggatcgcctggtgtgtggcgacgtggggtttggc
aaaaccgaagtcgccatgcgcgccgcttttgtggcgagccacggtggcaagcaggtagca
atacttgcacctacaaccctgcttgcacagcaacattacgaatcactgaaggatcgcttt
gcggaatggccaattactgttgaagtgctatcgcgtttccgcaccaccaaagaagtgaat
caagtcttggagcgagttgcggaaggtaaagtcgatatcgttgttggcacccataaatta
ttgcagccggatattaaattcaaaaatcttggcttgctaattatcgacgaagaacaccgt
tttggcgtgcgccaaaaagagcaaattaaatcgctgcgcgcggaaattgatattctcaca
cttaccgcaacgccaatcccccgcaccttgaatatgtccatggcgggcattcgggattta
tcgattatcgccacgccgccagcgcgtcgcttgtcggtaaaaacctttgtgcgcacttac
gatgaagccaccattaaagaggcaatcctgcgcgaaattttgcgcggtggccaagtgtat
tacctgcacaacgaagtggataccattgaaaaaaccgcacgcgacttacaggaattaatt
cccgaggcgcgtatcgcggtgggccatggtcaaatgcgcgagcgcgaccttgagcgagtg
atgagtgatttctaccacaagcgttttaacattatggtgtgcaccaccatcattgaaacc
ggtatcgatattcccagcgccaacaccattattattgatcgcgccgataaatttggcctc
gcacaattgcaccaattgcgcggccgcgttgggcgctcgcaccaccaggcctatgcgtat
ttattaacgccggaccgacgtgccatgaccgacgatgcggtaaaacgtttagaggccatc
agtgccgccgaagacctgggcgcaggttttaccctggcaacttacgatatggaaattcgc
ggcgccggtgaattactcggcgaagagcaaagcggccaaatccaaaccatcggcttctcg
ctctatatggatatgctcgaccgcgcggttaaagccattcgccagggcaagcaagccgat
ctggaaaaagcactcagtgaagccattgacattaatttgcgcattccggcattaatcccc
tcggattacttgcccgatgtacatacgcgattggtgatgtacaagcgtctggcgaacgcc
caaaatgaagaggcactgcgagagctgcaagtagagatgattgaccgctttggtttgttg
ccagaggcaattaaaaacctcttccgcgttacgcaaattaaaattcgcgcagaagcaatt
ggcatcatcaaactcgaagccaatagtcgcggtggcaaagttgagttcaccagtgatacc
aaggttgacccgctgcagattgtaaagttggttcaaagccaaccacgcgtatacaaattg
gaaggcgccagtcagttgaaatttacgctggatctggaagcgaccgaaaaacgtatccaa
ggtgttatggatttgcttgattacctgacaccaaaacactaa
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