Cellvibrio sp. KY-GH-1: D0C16_07470
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Entry
D0C16_07470 CDS
T06422
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ceg
Cellvibrio sp. KY-GH-1
Brite
KEGG Orthology (KO) [BR:
ceg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ceg03016
]
D0C16_07470 (rnd)
Enzymes [BR:
ceg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
D0C16_07470 (rnd)
Transfer RNA biogenesis [BR:
ceg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D0C16_07470 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QEY15827
UniProt:
A0A5J6P4X2
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All DBs
Position
complement(1734495..1735634)
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AA seq
379 aa
AA seq
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MLIPTEPIWIDRDDQLAELCANWRLQAAIAVDTEFMRSETFYPIAGLLQIGDGKGCYLID
PLAINNNAPLRELMLDPAVTKVLHSCSEDLEVFQRWLDVVPAPIFDTQIAAAFAGLGFSL
GYSSLVKTLLAIEIPKDETRSDWLQRPLSVAQLKYAALDVAHMLVVYGKLLQLLKANERL
EWVKSDCADLVANARKADDFLDAYQKVGFAWKLRPQELAVLRDLCIWREREARARNIPRN
RLIKEPSLWEIARKKVQDLALLPKIPDIPSRTVKHDGETIVKIVVDALNSAEISWPARLD
PPLAQSEGPLMKALKSFVREFAEQQQIPAEVLIRKKDYEFIVRSGMKGGTYQLPVRLQGW
RFGLIGEGLLRLAQTQTLS
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgctgattccaactgaacctatctggattgatcgggatgatcaattagctgagctgtgc
gctaactggcgcctgcaagcggctattgctgtagacacggaatttatgcgcagcgaaact
ttttatcccatcgctgggctgcttcaaattggcgatggaaaaggttgttatttaattgac
cccttggcgattaataataacgcgccgctgcgtgagttaatgctcgaccctgctgtgacc
aaagtattgcactcctgctctgaagacctggaagtatttcaacgctggttggacgtagtg
cctgcaccgatatttgatacgcaaattgccgccgcgtttgcgggtctggggtttagcctg
ggttattcatccctggttaaaaccttgctcgccattgaaattccaaaagatgaaacccgc
tctgattggctgcaacgtccactcagtgtggcgcaattaaagtatgccgccctggatgtc
gcccacatgctggtggtctacggcaaattattgcaattgttaaaagccaatgagcggttg
gagtgggtaaaaagtgactgtgccgatttggtggccaatgcccgcaaagcggatgatttt
ttggatgcctaccagaaagtcggttttgcctggaagctgcgcccacaagaattggcagtg
ctgcgcgatctgtgtatctggcgtgaacgcgaagcgcgtgcccgcaatattccgcgcaac
cgtttaattaaagaacctagtctgtgggaaattgcacgcaaaaaagtgcaggatctagca
ctgttacccaagattccggatattccttcgcgcacggttaagcacgatggtgaaaccatc
gtaaaaatagttgttgatgcgctgaactcggcggaaatcagttggccagcgcgcttggat
cctccgctcgcacagagcgagggcccgctaatgaaagcgctgaaaagttttgtgcgcgaa
tttgccgagcaacagcaaattccagcggaagtattaattcggaaaaaagattacgaattt
attgtgcgctcagggatgaaaggcggtacttatcaattacccgtgcgtttgcaagggtgg
cgttttggtttgattggcgaaggtttgttgcgtcttgctcagacccaaacgctgtcttaa
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