Cellvibrio sp. KY-GH-1: D0C16_13490
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Entry
D0C16_13490 CDS
T06422
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ceg
Cellvibrio sp. KY-GH-1
Pathway
ceg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ceg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0C16_13490 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceg03019
]
D0C16_13490 (pnp)
03016 Transfer RNA biogenesis [BR:
ceg03016
]
D0C16_13490 (pnp)
Enzymes [BR:
ceg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
D0C16_13490 (pnp)
Messenger RNA biogenesis [BR:
ceg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D0C16_13490 (pnp)
Transfer RNA biogenesis [BR:
ceg03016
]
Prokaryotic type
tRNA degradation factors
D0C16_13490 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
CRS1_YhbY
DUF7275
Motif
Other DBs
NCBI-ProteinID:
QEY16899
LinkDB
All DBs
Position
complement(3097928..3100063)
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AA seq
711 aa
AA seq
DB search
MNPIIKKFQYGNQTVTLETGRIARQATGAVLATMGEVSVLCTVVGAKEAKAGQDFFPLSV
HYQEKAYAAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQVICTVVSTD
KKQDPDIISMIGTSAALAISGIPFNGPIGGARVGYTQEDGYILNPSYKQLETSELDMVVA
GTKDAVLMVESEAKELPEDIMLGAVLYAHQELQAVVQACAELARDAGKPRWEWQVPAVNQ
PLKDAIAKSFGDSIGMAYRITDKAKRYDRLDELRSQAVAELVTETSGFTADEVKGEFGNY
EYRLVRSRIVANEPRIDGRDNKTVRPISVEVGVLPKAHGSALFTRGETQALVVATLGNAR
DVQIIDFLEGEKKEAFMLHYNFPPFSVGECGRMGATGRREIGHGRLAKRGVQSVLPTQEA
FPYTLRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEPEGFAVLTD
ILGDEDHLGDMDFKVAGTTSGVTALQMDIKIEGITEEIMEIALEQALAARLHILGEMNKV
LAKSRTAVSENAPRFETIKIHPDKIRDIIGKGGATIRSITEETQSSIDIDDDGTVKIYAD
NNEALQAAILRVQGIVAEAEIGAIYEGTVVRIVDFGAFVNFLPGKDGLVHISQIAEERVN
NVSDYLKEGQVVKVKCLDVDQRGRIKLSIKEAVAEESGAAPAAPAEAAAEE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccgattattaagaaattccaatacggcaaccaaaccgtaaccctcgaaactggc
cgtattgctcgtcaggcaaccggcgcagtattggcaactatgggtgaagtatctgtactt
tgtaccgttgttggtgcaaaagaggcaaaagcaggccaagacttcttcccgttgtctgtg
cattatcaagaaaaagcgtacgcggcaggccgcattcccggtggctacttcaagcgcgaa
ggtcgtccatctgaaaaagaaaccctgacttcacgtttgatcgatcgtcctattcgtccg
ctgttcccagaaggttttttcaacgaagtacaagtgatttgtactgttgtttctaccgat
aagaagcaagatcccgatatcatttccatgattggtacttctgctgccctcgcgatctcc
ggtatcccatttaatggtccaattggtggtgcgcgcgtaggttacacgcaagaagacggt
tacatcctcaacccaagttacaaacaactcgaaacgtccgagttggacatggtggttgct
ggtaccaaagatgcagtattgatggttgagtctgaagcaaaagaattgccggaagatatt
atgctcggcgctgttctctatgctcaccaggaattgcaagccgttgtgcaagcttgtgct
gagttggctcgcgacgcgggcaagccgcgttgggaatggcaagtacctgccgttaatcag
ccgctcaaagatgcaattgcaaagagctttggcgattcaatcggtatggcgtaccgcatt
actgacaaagccaagcgttatgatcgtttggatgagttgcgcagccaggcagttgccgag
ttggtaacagaaacttccggctttactgcagatgaagtaaaaggtgaatttgggaattac
gaataccgtttggtgcgttcacgtattgttgccaacgaaccacgtatcgacggtcgcgac
aacaaaactgtgcgcccgatttcagtagaagtaggtgtattaccaaaagcgcacggttct
gcattatttacccgcggtgaaacacaagccttggttgttgctaccttaggcaatgcacgc
gatgtacaaattatcgatttcctcgaaggcgagaaaaaagaagccttcatgctgcactac
aacttcccacctttctctgtaggtgagtgtggtcgtatgggcgcaactggtcgtcgcgaa
atcggtcacggtcgtttagctaagcgcggcgtgcaatcggttctgccaacgcaagaagct
ttcccttacaccctgcgcgtagtgagtgaaattactgaatctaatggttcaagctcaatg
gcgtctgtgtgcggctcgtcattggcgttgatggacgccggtgttccgctgaaagcacca
gtggctggtatcgcaatgggtctggtaaaagaaccagaaggctttgcggtattgaccgat
atcctcggtgacgaagatcacttgggcgatatggactttaaagtagccggtaccaccagc
ggtgtaactgcactgcaaatggatatcaaaatcgaaggcatcaccgaagagattatggaa
atcgcactggagcaagctctggcagcgcgtttacacatcctcggtgaaatgaacaaggtc
ctcgccaaatcgcgtactgcggttagcgaaaatgccccacgttttgaaaccatcaaaatt
catccggacaaaatccgcgacatcatcggtaaaggcggtgcaactattcgctctattact
gaagaaactcaatcttcaatcgatatcgatgatgacggcactgtaaaaatttacgccgac
aacaacgaagcgctgcaagcggcaattctgcgcgtgcaaggtattgttgctgaagcggaa
atcggtgcgatctacgaaggcactgtggtgcgtatcgtagacttcggtgcattcgttaac
ttcctgccaggtaaagatggcctggtacacatctctcaaatcgctgaagagcgcgtaaac
aacgtgagcgattatctgaaagaaggtcaggttgttaaagtgaaatgcctggacgtagac
caacgcggccgcatcaaactttctattaaggaagcggtagcggaagaatctggtgctgca
ccagcagctccagctgaggctgcggcggaagagtaa
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