Cellvibrio sp. KY-GH-1: D0C16_21935
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Entry
D0C16_21935 CDS
T06422
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ceg
Cellvibrio sp. KY-GH-1
Pathway
ceg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ceg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0C16_21935 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceg03019
]
D0C16_21935 (rhlB)
Enzymes [BR:
ceg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D0C16_21935 (rhlB)
Messenger RNA biogenesis [BR:
ceg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D0C16_21935 (rhlB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Helicase_RecD
AAA_22
ORC6
Motif
Other DBs
NCBI-ProteinID:
QEY18411
UniProt:
A0A5J6PD84
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All DBs
Position
5142025..5143644
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AA seq
539 aa
AA seq
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MRLIGFFKKLMGSGTDKPSKQETAVKTPEKSGGDKGSGPRKHPRDRHQDQRQRNARNQHA
KSDHGKSDHAKAEQTENAPRFEKPRQAKPEKQHHTKRPVKVDHGPWDISEFQVEAIDGKT
RFHDFDLELPLLRGIAALGFKYCSPIQAQSLPHALKGKDVVGKAQTGTGKTAAFLTAIID
DLLKNPITEKRYAGEARALVIAPTRELVMQIAEDAKALCKYTDLKIHTLVGGMDYAKQQR
HLHEDLVDILVATPGRLLDFCGNKDVYLDQLEVLVIDEADRMLDMGFIPQVRQIVRQTPK
REERQTLFFSATFTDDVHNLVQQWTYKPVTVEIEPESVANARVDQHVYLVSTEEKYTLLY
NLIQQEHAESMIVFANRRDECRDLHEKLLRHGIKAGLLSGEITQNKRVSTLDAFKNGEIK
VLVATDVAGRGIHISGISHVVNFTLPEEPEDYVHRIGRTGRAGKTGTSISFACEDDALRL
EPIALLLGKPIKCEQPPEPLLLEPPALSPAPPRARSNERYTNRSVGNRPGGNRNRRPRH
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgagattgataggcttttttaaaaaattaatgggctccgggactgataagccctccaag
caagaaactgcggtaaagaccccggagaagtcgggtggtgataaaggttccggtccacgt
aagcaccctcgtgaccgccatcaggatcagcgccaacgcaatgcgcgcaatcagcacgcc
aaatccgatcatggcaaatccgatcatgcaaaggcagaacaaaccgaaaacgcgccccgg
ttcgaaaaaccgcgtcaggccaaacccgaaaagcaacaccacactaagcgccctgtaaaa
gttgatcacgggccttgggatatttctgaatttcaggtggaagcaatcgacggtaaaacc
cgcttccatgattttgatttggaattgcctttgctgcgcggcattgcggcgctgggtttc
aaatattgttctcctatacaggcgcaatccttaccccatgcactgaaaggcaaagatgtg
gtgggcaaagcccaaaccggtactggaaaaacggccgcgttccttaccgcaattatcgat
gacctgttaaaaaaccccattactgaaaaacgttatgccggtgaagcgcgcgcattggta
attgcacctacgcgcgaactggtaatgcaaatagcggaagacgccaaggcactgtgcaag
tatacggatttaaaaattcatacgctggtaggtggaatggattacgccaagcaacagcgc
catctgcacgaagatctggtggatattctcgtggcgactcccggtcgcttgctggatttt
tgcggcaataaagatgtgtatctggatcaactcgaagtattggttattgatgaagcagat
cgcatgttggatatgggttttattccgcaagtgcgccaaattgttcgccagactcccaag
cgggaagagcgccaaaccttattcttctctgcaacttttactgacgacgtgcacaacctg
gtacaacaatggacttacaaacccgtaaccgttgaaattgagcctgagtcagtggccaat
gcccgtgttgatcaacatgtgtatctggtatccaccgaagaaaaatacacgctgctctac
aacctgattcaacaggagcacgcggagagcatgattgtatttgcaaaccgtcgcgatgag
tgtcgcgatcttcatgaaaaattgttgcgtcatggtattaaagccggattgttgtcgggt
gaaattacccagaacaaacgtgtctctacgttggatgcgtttaaaaacggcgagatcaaa
gtgttggtagctacggatgtggctggccgtgggattcacatcagtggcatcagccacgtc
gtgaattttaccttgccggaagagccggaagattacgtgcatcgcatcggtcgaaccggc
cgtgcgggtaaaaccggaacctcaatcagcttcgcgtgtgaagatgatgcgctgcgactg
gagccgattgcgttgttgctgggtaaaccgattaagtgcgagcaaccaccggagccgtta
ttgcttgagccgccagcattgtcgcccgcgcctccgcgtgcacgtagcaatgaacgctac
accaatcgctcagtgggcaatcgccctggcggaaaccgtaatcgtcgtccgcgtcactga
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