Cellvibrio sp. KY-GH-1: D0C16_23895
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Entry
D0C16_23895 CDS
T06422
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ceg
Cellvibrio sp. KY-GH-1
Brite
KEGG Orthology (KO) [BR:
ceg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceg03019
]
D0C16_23895 (hrpA)
Enzymes [BR:
ceg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D0C16_23895 (hrpA)
Messenger RNA biogenesis [BR:
ceg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D0C16_23895 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
SRP54
AAA_25
AAA_22
nSTAND3
NACHT
TsaE
ResIII
AAA_23
ABC_tran
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QEY19208
UniProt:
A0A5J6PF48
LinkDB
All DBs
Position
5675186..5679148
Genome browser
AA seq
1320 aa
AA seq
DB search
MSNPWSSYKQSVTQVMGRDYHKLVRRLSEIEKLARAEKPFDQALEKWQQQLAHSQAEVMR
RQELVPADIEFPALPVCEKREEIAQIIAANQVVVLAGETGSGKTTQIPKICLSIGRGVKG
LIGHTQPRRIAANTVANRIAEELKTTLGEKVGYQVRFSDQSNENTLIKVMTDGILLAEIQ
HDPFLNKYDTLIIDEAHERSLNIDFLLGYLKQLLAKRPDLKLIITSATIDLERFSQHFNN
APIIEVSGRTYPVDVWYRPLYEFENSEGEDAEPDQYAAIVDAVREIELHEKTGSGVRGGD
ILVFLSGEREIREAADALRKAQFAHMEVIPFYARLSLAEQQKVFAPHTGRRIVLATNVAE
TSITVPGIRYVIDPGFARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVAEGICIRLY
SEDDFKSRPEFTDAEILRTNLAAVILQMLQLRMGDIHKFPFIDAPDHRLISDGFKLLEEL
HAVNSKNQLTPVGQQLAKLPLDPRLARMMLAAQEQSCIRELLIIVSALSVQDPRERPVEK
QQAADQMHRRFWSEHSDFLGYVSLWDYFETQRQELSQNQLRKLCKKEFLSYLRLREWRDV
HHQLCVAIKDLGFRINSEPANYESIHKALLTGLLGNLGFNHEEREYLGARNRKFAIFPGS
SLAKKTPKWMMAAELIETSKLFAHTVAKIEPEWVIGAAEHLIKRQHFEPHYDSRAGQVMA
YEKITLYGLTIVEKKSVNYSHIDAAQAREVFIRAALVEGQYAQHPKRKHLQQQAGFTDFY
THQQQLLLQLEALEAKSRRRDIVVDEQVIFDFYNDRIPSDVVNLAGFESWRKKAEQTNPQ
LLYITRETLMRHGAGEITEAQFPNELEWRGMVFPLSYHFEPKHAFDGVSIHVPMSVLHQV
PEQRLEWLVPGMLRDKCIGLIKSLPKNLRKHFVPVPDLVDKLLAVITPDNKPLSEAMGVQ
LKRLTGVDIPKEAWLETNVDDYYRFNIHVVDDKGKVIASGRELNPLREKYREKVQQNIQS
AATDIERDGITAWDFDELPQAIQLPRGGISIRAYPALVDKNSSVALQVLDNPLQALDFTQ
RGLTRLTYLSLGQTVKYLHKELLKGQEVALTLAGIGSRDQVVDDLIMAAIKQLAFADQQQ
LPREKSLFESLLQTIKDKLISHAQELANQLITSLKLLVEIKKQLKQQKNMLVLAYTIGDI
NQQLAQLYYPGLVYKTPSQWLQQYPKYMRGIQQRLEKAALNSQKDKLQLAEVAPHWQRLA
DYLAKEGDYRLGQLSELMEYRWWVEELRISLFAQTLKTQVPVSDKRLDKQWEQALLQAQG
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatccctggtcaagttacaagcaatccgttacccaggtaatggggcgcgattat
cacaagttggttcgccgattaagcgagatcgaaaagctcgcgcgtgccgagaagcctttt
gatcaagcgctggaaaaatggcaacaacagcttgcgcattcgcaagccgaagttatgcgc
cgtcaagagcttgttcctgctgatattgaattccctgcgttaccggtgtgcgaaaagcgt
gaagagattgcgcaaattattgccgctaatcaggtggtagtgctcgccggtgaaaccggt
tccggtaaaacgacccagattccgaaaatttgtttaagtattggtcgcggtgttaagggc
ttgatcggtcacacccagccgcgccgaattgccgccaatactgttgccaatcgcatcgcc
gaagaattaaaaaccacactcggtgaaaaggtgggttatcaggtcaggttcagtgatcaa
tccaatgaaaacaccctgatcaaggtgatgaccgatggtattttgttggcagaaatccag
catgatccgtttttaaataagtacgatacgctgattatcgacgaagcccatgagcgcagt
ctgaatatcgattttctactcggctatttaaagcagctgttggccaagcgcccggattta
aaattaattatcacctcggccactatcgatctggagcgcttctcgcagcattttaacaat
gcgccgattatcgaagtctccggtcgcacctatccggtggatgtctggtatcgcccgctc
tacgaatttgaaaacagtgagggtgaagatgccgagccggatcaatatgcggcgattgtc
gatgcggtgcgcgaaatcgagctgcatgaaaaaaccggttcgggtgtgcgcggtggcgat
atcctggtgtttttaagtggtgagcgcgaaattcgcgaagccgccgatgcgttgcgcaaa
gcccaatttgcccatatggaagtcattccgttttacgcgcgtctgagtttggcggagcaa
caaaaagtgtttgcgcctcacaccggccgccgtattgtattggctaccaacgtagccgaa
acctcgatcaccgtaccgggtattcgctatgtcattgacccggggtttgcgcgtatcagt
cgctactcctatcgcactaaagtgcagcgcttgccgatagagccggtttcgcaggcgagc
gcgaatcagcgcaagggtcgctgcgggcgtgtggcggaaggtatttgtattcgcttgtac
agcgaggacgattttaagtcccgccctgagtttaccgatgctgaaattctgcgcaccaac
cttgccgccgtaattttacaaatgctgcaattgcgcatgggcgatattcataaattccca
tttattgatgcacctgatcatcgcctgattagcgatgggtttaaattgctggaagagctg
cacgcggttaacagcaaaaaccagttaacgccggtgggccagcagttggccaaactgccg
ttggacccgcgcctggcgcgcatgatgttggcggcgcaggagcaatcctgtattcgcgag
ctattaatcattgttagcgcgttgtcggtgcaggacccgcgcgaacggccggtggaaaag
caacaggccgctgatcaaatgcatcgccgtttttggtccgagcattcggatttccttggt
tatgtcagcctgtgggattattttgaaacccagcgtcaggaactctcacaaaatcagctg
cgcaaactctgcaaaaaagaatttctatcttacttgcgtttgcgcgaatggcgcgatgtg
caccaccagttgtgcgtggcgataaaggatttgggttttcgcattaatagcgagcctgcg
aattacgaatctattcataaagcgcttctgaccggcttgttgggaaatttgggattcaat
cacgaagagcgtgaatatttaggggcgcgtaatcgcaaatttgcgattttccccggctcg
tcgctagcgaagaaaacgcccaagtggatgatggcggcagagttaattgaaacctccaaa
ttatttgcgcacacagtagcgaaaattgaacctgagtgggtgattggtgcagcagagcat
ttgatcaagcggcaacatttcgaacctcattatgactcgcgcgcaggccaggtaatggcc
tacgaaaaaattacgctttatggtttaacgattgttgagaaaaaatcggttaactacagc
catatagatgcagcgcaagcgcgagaagtatttattcgcgcagccttggtggaaggccag
tacgcgcagcaccccaagcgcaaacatttgcagcagcaagcaggcttcacggatttttat
acgcatcaacagcaattgttactgcagttggaagcgttggaagcaaagtctcgccggcgc
gatatagtggtggatgaacaggttatttttgatttttataacgatcgaattccatctgat
gtggtaaatctcgccgggtttgaatcctggcgaaaaaaagcggagcaaaccaacccgcaa
ttgctgtatatcacgcgagaaacattaatgcggcacggtgcgggtgagatcaccgaagcg
caattccccaatgagctggaatggcgtggcatggtgtttccgctgagttatcattttgaa
cccaagcatgcatttgatggtgtgagtatccacgtacctatgagcgtcctccatcaagtg
cccgagcagcggctcgaatggttagtaccgggtatgttgcgcgataaatgcatcggcttg
attaaatccctgcctaaaaacctgcgcaaacattttgtacctgtgccggatttggtggat
aaattgttggctgtaattacgcctgacaataaaccgctcagcgaagccatgggggtacaa
ttaaaacgccttacgggcgtggatattccgaaagaagcctggttggaaaccaatgtggat
gattactatcgctttaatatccatgtagtagatgacaaaggcaaagtaattgcgagtggc
cgcgagttgaatccgctacgcgaaaagtatcgtgaaaaagtgcagcaaaatatccagtcg
gcagcaaccgatattgaacgcgatggtattactgcctgggattttgatgaactgccacag
gctatacagttgccacgtggtggaatcagtattcgtgcttatcccgcactggtggataaa
aattccagtgtggccttgcaggtgctggataatcctttgcaagccttggattttactcaa
cgcggcttaacacgcttaacgtatttatcccttgggcaaactgttaaatatttacacaaa
gaattattaaaagggcaggaggttgcgctgaccttggcaggaattggcagccgtgatcag
gtggttgatgatttaattatggcagctatcaaacaactagcttttgccgatcaacagcaa
ttgccgcgcgaaaaatcgttgtttgagtctttattgcaaacgatcaaagataaattaatt
tcccacgcgcaagagctggcgaatcaattaattaccagtttgaaactgttggtcgagatt
aaaaagcagcttaaacaacaaaaaaatatgttggtgctcgcgtataccattggtgacatc
aatcaacagctggcgcagctctattaccctggtttggtatacaagacaccgtcgcaatgg
ttgcagcagtatcccaaatatatgcgcggcatccagcaacggctggagaaggcggcgtta
aattcccagaaagataagttgcagctggcagaggtcgcaccgcattggcagcgcctcgca
gattatctggcgaaggaaggtgattatcgccttgggcagttgtcggagctgatggaatac
cgttggtgggtggaagaactgcgcatctccttattcgcccagaccttgaagacccaggtg
ccagtatccgacaaacgcttggataagcagtgggagcaagctcttttacaagcccaaggg
tag
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integrated database retrieval system
