Celeribacter ethanolicus: CEW89_03455
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Entry
CEW89_03455 CDS
T05094
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ceh
Celeribacter ethanolicus
Pathway
ceh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ceh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEW89_03455 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ceh03400
]
CEW89_03455 (mfd)
Enzymes [BR:
ceh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEW89_03455 (mfd)
DNA repair and recombination proteins [BR:
ceh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CEW89_03455 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
Cas3-like_C_2
AAA_16
SecA_DEAD
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ATG46697
UniProt:
A0A291G960
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All DBs
Position
692565..696044
Genome browser
AA seq
1159 aa
AA seq
DB search
MSKANHLTVGGAPEGFDAFYLAREVARSEAPVIHVARDDKRLAALRDGLRFFAPDLPVLE
FPAWDCLPFDRSSPNPDLAAQRMATLAALAHGAVPKRFVLLTTLSSATQRVPARDTLAEA
AFTLRKGQRVNEAELRAFFVRMGFTQAPTVVEHGDYAIRGGIIDVFPPGQVLPVRLDFFG
DELDGIRRFDPASQKTVDTLAEVSFTPVSEVILDEPAITRFRQNYRIEFGAAGTDDPLYE
AVTAGRKHAGMEHWLPYFHERLDTIFDYLPGVTISLDNQSTTARLSRWEGIEDQYQTRRE
ALAAKGRLDSVYKPCPPGLLYLDDAAWEAATEGRRVIHFHPLPQASGPGVIDAGGRVGRN
FSPERQMEGVNLFEELSGHIRKRREVGQVIVASWSEGARERLKSLLEDEDLNGLTEISDW
RDVPDGIGGVYLAVWTLDQGFEAPVGDGHSVTVISEQDVLGDRLIRRPGRRKKAENFLTE
HSTLSPGDLIVHVEHGVGIFRGLEVVTALGAAHECLLLEYAGGDRLYLPVENIELLSRYG
HDEGLLDKLGGGAWQAKKARMKERIREVAEKLIRIAAERHIRKAPIMEPPEDMWEAFCAR
FPYTETEDQMKAIEDVLDDLDRGMPMDRLVCGDVGFGKTEVAMRAAFVAALSGAQVAVIA
PTTLLARQHFRSFAERFRGFPINIRPMSRFVSAKDMAKTREELAEGTVDIVVGTHALLAK
SVKFANLGLLIVDEEQRFGVTHKERLKSLKSNIHVLTLSATPIPRTLQMSLTGVRDLSII
GTPPVDRLSIRTYVSEFDTVTIREALLREHYRGGQSFFVVPRVSDIPEIEEFLKAQVPEL
THVVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGIDIPTANTMVVHRADMFGLAQL
YQIRGRVGRAKTRAYAYLTTNPRAPLTPQAEKRLRVLGSLDTLGAGFTLASQDLDIRGAG
NLVGEEQSGHVKEVGFELYQSMLEEAIARIKSGEEAVSLDDDGQWAPQINLGVPVLIPET
YVPDLDVRLGLYRRLSGLKTKVELEGFAAELIDRFGKLPKEVNTLLLVVRIKEKCREAGI
ARLDGGPKGATIQFHNDKYANPAGLVEFIHGQKGQAKVKDNKIIIRRDWKKDSDKIKGAY
SIAQDLAKFAKTAAQPSKK
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggccaatcatcttaccgtcggcggcgcgccggaggggttcgacgcgttttac
cttgcccgcgaagtggcgcgctcagaggcgcccgtgatccatgtggcgcgggacgacaag
cgtctggcggccctgcgcgacgggctgcggttctttgcgcccgatctgccggtgctggaa
ttcccggcttgggattgcctgcctttcgaccgcagttcgcccaaccccgacctcgccgca
caacgcatggcgacgctggcggctctggcccatggcgcggtgccgaaacgctttgtcctg
ctgaccacgctgtcctccgcgacccagcgcgtcccggcgcgggatacgctcgcggaggcg
gcgtttacgctcagaaaaggccagcgcgttaatgaggcggagttgcgggcgtttttcgtt
cgcatgggctttacccaagcgccgaccgtggtggagcatggcgactatgccattcgcggt
ggcatcatcgacgtcttcccgccggggcaggttttgccggtgcggctcgattttttcggc
gatgagctggacggcatccggcgcttcgatccggcgagccagaaaaccgtcgacaccctg
gcagaggtcagcttcacgccggtctctgaggtgatccttgatgagccggcgatcacgcgg
ttccggcaaaattaccgcatcgaattcggtgcggcaggcaccgacgatccgctctatgag
gcggtgacggcggggcgcaaacatgcgggcatggagcattggctcccgtatttccacgaa
cggctggatacgattttcgattatctgccgggcgtaacgatttcccttgacaatcaatcg
actacggcgcgtctttcgcgctgggaaggcattgaggatcagtatcagacccggcgcgag
gcactggctgccaaggggcggctggactcggtctacaaaccctgtccgccgggtttgctt
tatctcgacgatgcggcgtgggaggcggccaccgaaggtcgtcgggtgatccatttccac
cctctgccgcaggcctccggccccggtgtgatcgacgcgggcggtcgtgtcgggcgtaat
ttctcgcccgagcgccagatggaaggcgtcaatcttttcgaagagttgtcgggtcatatt
cgcaaacggcgcgaagtcgggcaggtgatcgttgcctcatggtccgaaggcgcacgggag
cggctcaagtcgcttttggaagacgaggacctgaatgggctgacggagatttccgactgg
cgcgatgtgccggacgggatcggcggcgtgtatcttgcggtctggacgctggatcagggc
tttgaggcgccggtgggcgacggccattccgtgacggtgatttccgagcaggacgtgttg
ggcgaccggctgatccgccgtccgggacgacgcaagaaggcggagaatttcctcaccgaa
catagtacgctgagccccggcgatctgatcgtccatgtcgaacatggcgtggggattttc
cgcgggcttgaggtcgtgaccgctctgggcgcggcgcatgaatgtcttctcctggaatat
gcgggcggggatcggctttatcttcccgttgaaaacattgagcttctgagccggtacggc
catgacgaagggcttttggacaagctcggcggcggcgcttggcaggccaagaaagcgcgg
atgaaggaacgcatccgcgaggtggcggagaagctgatccgcatcgccgccgagcgccat
atccgtaaagcgccgatcatggagccgccggaggatatgtgggaggccttctgcgcgcgt
ttcccttatacggagaccgaggatcagatgaaggccatcgaagatgtgctcgatgatctg
gatcgcggcatgccgatggaccgcctcgtgtgtggcgatgtgggatttggcaagaccgag
gtggcgatgcgcgcggcctttgttgcggcactttcgggcgcacaggtggcggtgatcgca
ccgacgacgcttctggcgcggcagcacttccgcagctttgccgagagattccggggtttt
cccatcaatatcagaccgatgtcgcgctttgtttccgcaaaagacatggcgaaaacccgg
gaggaactggccgaagggacggtcgatattgtcgtgggcacccatgctttgctggcgaaa
tcggtgaagtttgccaatctgggcctcttgatcgtggacgaggaacaacgctttggtgtg
acccacaaagagcgccttaagtctttgaagtccaacattcatgtgctgacgctttcggcc
acgccgatcccgcggacgctgcaaatgtcgctcaccggggtgcgggatctctctattatt
ggcacgccgcccgtcgaccggctgtcgatccgcacctatgtgtcggaattcgacacggtg
acgatccgcgaggcgctgttgcgcgaacattaccggggcgggcagtcgtttttcgtggtg
ccgcgcgtcagcgatattccggagatcgaagagttcctcaaggcgcaagtgccggagctg
acccatgtggtggcgcatggtcaaatggcggcgggcgagctcgacgatcggatgaacgcg
ttttacgacgggaaatatgacgtgctgctggcgacgaccatcgtggaaagcggtatcgac
attccgaccgcaaacacgatggtggtgcaccgcgccgatatgttcggcctcgcgcagctc
tatcaaatccggggccgagtgggccgtgccaagacgcgcgcttatgcctatctgaccacg
aacccccgcgcgcctttaacaccgcaggcggaaaaacgtctgcgggttctgggctcgctc
gatacgcttggggccggatttacccttgcgtctcaagatcttgacatccggggcgcaggc
aatctggtgggtgaggagcaatccgggcacgtcaaagaggtcggctttgagctctatcaa
tccatgctggaagaggccattgcgcggatcaaatcgggcgaggaggcggtgagccttgac
gacgacggccaatgggcgccgcagatcaaccttggcgtgccggtgctgatccccgaaacc
tatgtgcctgatctcgatgtgcgcttggggctctatcggcgtttgtccggcctgaaaacc
aaggtggagctggaaggcttcgcagccgaactgatcgaccgctttggaaaattgcccaaa
gaggtcaacaccttgctgctcgttgttcggatcaaggagaaatgccgggaggccgggatt
gcgcggctcgatggcgggccaaagggcgcgacgatccagttccacaacgacaaatatgcc
aacccggcggggcttgtggaattcatccatggccagaagggtcaggccaaagtcaaagac
aacaagatcatcatccggcgcgactggaagaaggacagcgacaagatcaagggcgcgtat
tcgattgcgcaggaccttgcgaaattcgcgaagaccgctgcgcaaccatctaaaaagtaa
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