Corynebacterium epidermidicanis: CEPID_01865
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Entry
CEPID_01865 CDS
T03955
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cei
Corynebacterium epidermidicanis
Pathway
cei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CEPID_01865 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cei03021
]
CEPID_01865 (rpoC)
03400 DNA repair and recombination proteins [BR:
cei03400
]
CEPID_01865 (rpoC)
Enzymes [BR:
cei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CEPID_01865 (rpoC)
Transcription machinery [BR:
cei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CEPID_01865 (rpoC)
DNA repair and recombination proteins [BR:
cei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CEPID_01865 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AKK02254
UniProt:
A0A0G3GM82
LinkDB
All DBs
Position
379348..383334
Genome browser
AA seq
1328 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDDEARHNDLTTLEAEMLLEKKDVEADMESEIAERAQKLEED
LAELEAAGAKADARRKVQNAADKEMQHIRERAEREIDRLDEIWNTFVKLAPKQMIIDENI
YTELVDRYEDYFTGGMGAEAIQNLIRGFDLDAEAEELREIINNGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYFLTLDKKEDEFGGQ
GAYRPADENGPAQGVYSSMAEAIMAYDRGVLGLQAKIKVRISHLRPPADIEAEQFPDGWN
KGDTWMADTTLGRIMFNELLPWNYPYLEGVMVRKGGGSDKIMLGDVITDLSARYPMITVA
QTMDKMKDAGFYWATRSGVTITMSDVLVLPNKDEMLDRYEAEARTIETKFQFGKLTTRER
YDRLVELWKDATDEVGKAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKGD
YITRPIKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREED
CGTRQGVRVPVAEKSGDKFVRHSLVETSVSGRVLAADATNAAGDVVLAAGTDLGELQIDA
LVDAGVEIVKVRSVLTCQTATGVCAKCYGKSMASGHQVDIGEAVGIVAAQSIGEPGTQLT
MRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGKVHLEDEGNFYTLTIEPEDG
SDNVVYEKLSKRQGLAMVKVPMESNPDAMIERTLREGDRVNVGDRLLRGPADPHDVLEVL
GRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPGTLVDLSE
AKRANAQAIADGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKL
IGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNSAPYSISNFGDSIYGDDGYGEFTGA
SVPLDESF
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctccgcattggcctcgccactgcggacgacatc
cgtcgctggtcaaagggcgaggttaagaagcctgagaccatcaactaccgtactttgaag
cctgagaaggacggcctgttctgcgaacgcatcttcggtccaacgcgtgactgggaatgt
gcctgtggcaagtacaagcgcgtccgttacaagggcatcatctgtgaacgctgtggcgtt
gaagtcaccaagtccaaggttcgtcgtgagcgcatgggccacattgagctcgccgccccg
gtaacccacatctggtacttcaagggtgttccttcccgcctgggctacctgctagacctg
gcaccaaaggacctggaacgcatcatttacttcgctgccaacatcatcaccagcgttgat
gacgaggcacgccacaacgacctgaccactctggaagcagaaatgctcctggagaagaag
gacgttgaggcggacatggagtccgagatcgctgagcgcgcgcagaagctggaagaggac
ctcgctgagctcgaagcagcaggtgcgaaggctgatgctcgtcgcaaggtacaaaatgcc
gctgacaaggaaatgcagcacatccgcgagcgcgctgagcgcgaaatcgatcgcctggat
gaaatctggaacaccttcgtcaagcttgcaccaaagcagatgatcatcgacgagaacatc
tacaccgagctcgtcgaccgctacgaggactacttcacgggcggcatgggtgctgaagct
attcagaaccttatccgtggctttgacctcgacgctgaagctgaagagcttcgcgagatc
atcaacaacggcaagggccaaaagaagatgcgtgcgctcaagcgcctgaaggtcgtagcg
gccttccagcgttccggcaacgaccctgccggcatggttctcgactgcatcccagtgatc
ccacctgagcttcgcccaatggtgcagctcgacggtggccgctttgcgacgtccgacctg
aacgacctctaccgtcgtgtaattaaccgcaacaaccgcttgaagcgcatgatcgagctg
ggtgccccagagatcatcgtgaacaacgaaaagcgcatgctgcaggagtcggtggacgcg
ctcttcgacaatggtcgtcgcggccgcccggtcaccggaccaggcaaccgtccactgaag
tccctgtctgacctgctcaagggtaagcaaggccgcttccgtcagaacttgctcggtaag
cgcgttgactactctggtcgttccgtaattatcgtcggccctcagctgcgcctgcacgaa
tgtggcttgccaaagctgatggctctcgaactgttcaagcctttcgtgatgaagcgtctg
gtcgaaaacgactacgcgcaaaacattaagtccgcgaagcgcatggtggaacgccagcgt
ccagaggtgtgggacgtcctcgaagaggcgatttccgagcacccagtgatgctgaaccgt
gcgccaacgctgcaccgcctcggtattcaggccttcgagcctgttctcgttgaaggtaag
gcaatccagctgcacccgctggcttgtgaagccttcaacgccgacttcgacggtgaccag
atggcagttcacttgccactgtccgcagaagcccaggcggaagctcgtgtgctgatgctg
gcttccaacaacattctgtccccagcatccggtaagccactggctatgccacgtctggat
atggtgaccggcctgtacttcctgaccctcgataagaaggaagacgaattcggcggccag
ggcgcgtaccgcccagccgacgaaaacggtccggcacagggtgtgtactcctccatggcg
gaagccatcatggcgtacgaccgtggggtgctcggcctgcaggcaaagatcaaggtgcgc
atcagccacctgcgtccgcctgcagatatcgaggcagagcagttcccagacggctggaac
aagggcgacacctggatggctgacaccaccctaggccgcatcatgttcaacgagctcctg
ccatggaactacccatacctcgaaggtgtgatggttcgtaagggcggcggctccgacaag
atcatgctcggcgacgtcatcaccgacctgtccgcgcgttacccaatgatcacggtcgca
cagaccatggacaagatgaaggacgctggtttctactgggcaacccgttccggcgtgacc
attaccatgtctgacgttctggtcttgccaaacaaggacgaaatgctggatcgctacgaa
gcagaagctcgtacgatcgagacgaagttccagttcggtaaactcacgacccgcgagcgt
tacgaccgcctggttgagctgtggaaggatgccaccgacgaagttggtaaggctgtcgag
gatctgtacccggacgacaacccgattccaatgatcgtgaagtctggtgctgcaggtaac
atgcgtcagatctggaccctggccggtatgaagggcatggttgtgaactcgaagggtgac
tacatcacccgtccgatcaagacctccttccgtgaaggcctgaccgttctcgagtacttc
aacaactcccacggttcccgtaagggcctggccgacaccgcactgcgtaccgcagactcc
ggctacctcacccgtcgtctcgtggacgtcgcccaggacgttatcgttcgcgaagaagac
tgtggcacccgtcagggcgtccgcgttccagtcgcggagaagtccggcgacaagttcgtc
cgccattctctggtagagacctcggtttccggtcgcgttctggctgctgatgcaacgaac
gctgccggcgacgtggtgctcgctgctggcaccgacctcggcgaactgcagatcgacgcg
ctggttgacgccggtgtagagattgtcaaggttcgctccgtgctgacctgccagactgcc
accggcgtgtgtgcaaagtgctacggcaagtccatggcttccggccatcaggtggacatc
ggcgaagcagtcggcatcgtcgctgctcagtcgattggtgagcctggtacccagctgaca
atgcgtaccttccaccagggtggtgtcggtggcgacattaccggtggtctgccacgtgtt
caggagctgttcgaagcccgtgttccaaagaaccgtgctccgatcgcttctgtcgcaggt
aaggtccacctggaggacgagggcaacttctacaccctgaccatcgagccagaagatggc
tcggacaacgtggtctacgagaagctgtccaagcgtcagggcttggcaatggtgaaggtt
ccaatggaatccaacccagacgccatgatcgagcgcaccctgcgcgaaggagaccgcgtc
aacgtaggcgaccgcctgctgcgtggtccagctgacccgcacgacgtgctcgaggttctc
ggccgacgtggtgtggagcagcaccttatcgacgaagtgcaggccgtgtaccgcgcccag
ggcgtggccatccacgacaagcacatcgaaatcatcatccgccagatgctgcgccgtggt
accgtcatcgaatccggttccaccgaattcctgccgggtaccctggttgatctgtccgaa
gcaaagcgagctaacgcccaggcaattgccgacggcggtcagcctgcggagcttcgctcc
gagatcatgggtattaccaaagcctcgctcgcgaccgagtcctggctgtccgcggcctcc
ttccaggagaccacccgcgtgcttactgacgccgctatcaacaagcgttcggacaagctg
atcggccttaaggagaacgtgatcatcggtaagctgatcccagctggtaccggtatctcg
cgctaccgcaacatctcggtcaagccgaccgaagctgcgcgtaactcggctccgtactcg
atctccaacttcggtgattcgatctacggtgatgacggatacggtgaattcaccggcgca
tccgttccgctagacgagagcttctag
DBGET
integrated database retrieval system
