Corynebacterium epidermidicanis: CEPID_04905
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Entry
CEPID_04905 CDS
T03955
Symbol
deaD
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cei
Corynebacterium epidermidicanis
Pathway
cei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEPID_04905 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cei03019
]
CEPID_04905 (deaD)
03009 Ribosome biogenesis [BR:
cei03009
]
CEPID_04905 (deaD)
Enzymes [BR:
cei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEPID_04905 (deaD)
Messenger RNA biogenesis [BR:
cei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEPID_04905 (deaD)
Ribosome biogenesis [BR:
cei03009
]
Prokaryotic type
rRNA helicases
CEPID_04905 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
UvrA_inter
CMS1
Cas3-like_C_2
adh_short
HEM4
Motif
Other DBs
NCBI-ProteinID:
AKK02851
UniProt:
A0A0G3GNP4
LinkDB
All DBs
Position
1006823..1008838
Genome browser
AA seq
671 aa
AA seq
DB search
MSNTDNVASGVEELENVTTSETQDNSQDVVADQAAQDIRDADTSEDDSTQGFENLGLPAE
VLKAIAKVGYETPSPIQSQTIPLLMEGRDVVGLAQTGTGKTAAFALPVLSRIDKSVRAPQ
ALVLAPTRELALQVADSFQEFADHLGGISVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRV
IDHLTKGSLDISGLRYLVLDEADEMLNMGFQEDVERILEDTPDDKQVALFSATMPNGIRR
ISKQYLNDPAEITVKSETRTNTNITQRFLNVSHRNKLDALTRILEVTEFEAMIMFVRTKH
ETEELAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVDRITH
VFNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNATLVEMELPTV
DEVNESRKEKFADSITASLEDSQLALFRSLVKAYSEEHDVPLEDIAAALATQAQAGSEFL
LKELPPERRRDDRRGDRFERDDRRGGRFDRDERRGGDRFDRNEDMTVYRLAVGKRQNVRP
GAIVGALANEGGLNSKDFGRISISVDHTLVELPKNLPSDVLDRLSDTRISGQLINIEAAP
GADMGPRGGFRKRDDFGRRDRDDRRGRGRGDREGGFGGRGRGDRDGGFGGRGRGDRDGGF
GGRGRGDRDYR
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagcaataccgataacgttgccagcggcgtagaagagctggaaaatgtcacaacgtcg
gaaactcaggataattcgcaggatgtcgtagccgatcaggctgcacaagacatcagggat
gcggacacttctgaggacgactccacgcaagggtttgaaaacctgggactgcctgcagaa
gtgctgaaggcaattgccaaggttggctatgagaccccgtccccaattcagtcacaaacg
attccacttttgatggaaggccgcgacgtcgtcggcctggcccaaaccggaaccggtaaa
accgcagctttcgccctgccggtgctttcgcgcatcgacaagtccgttcgcgcaccacag
gccctcgtgctggcgcctacccgcgagctggcgctgcaggttgcagactccttccaagaa
ttcgccgatcacctcggtggcatcagcgtcctgccgatctacggtggccaagcctacgga
attcagctttccggtctgcgccgcggcgcccagatcatcgtcggcacccctggtcgtgtc
atcgaccacttgaccaagggctcgctcgacatctccggtctgcgctacctcgtcctcgat
gaagcggacgagatgctcaacatgggcttccaggaagacgtggaacgcattctggaagac
accccggacgacaagcaagttgcgctgttctccgcgaccatgccaaacggcatccgtcgg
atctccaagcaatacctcaacgatcccgcggaaatcacggtcaagtccgagacccgcacg
aataccaacatcacccagcgattcctcaacgtctcgcaccgcaacaaactcgacgctctg
acccgtatcctcgaggtcaccgagtttgaagcaatgatcatgttcgtgcgcaccaagcac
gaaaccgaagagctcgcagaaaagctccgcgcccgcggattctctgccgcagctatcaat
ggtgacatcgcgcaggcgcagcgtgagcgcaccgtcgatcagctcaaggacggtcgccta
gacatcctcgtagccaccgacgtcgctgcgcgtggcctcgacgtggaccgcatcacgcac
gtcttcaactacgacatcccgcacgataccgagtcctacgtgcaccgaatcggtcgcacc
ggtcgtgctggtcgttccggtgaagcgatcttgtttgtcacaccgcgtgaacgtcggatg
ctgcgctccatcgagcgcgccaccaacgccaccctggttgagatggaactgccgaccgtc
gatgaagtcaacgaatcccgcaaggaaaaattcgccgattccatcaccgcttccctggaa
gactcgcagctcgcgctattccgctccctagtcaaggcatactccgaggagcacgacgtg
cctctcgaagatatcgccgcagcactcgcaacccaggcgcaagccggcagcgaattccta
ctcaaggaactgccaccagagcgccgtcgcgacgaccgtcgcggggaccgcttcgaacgc
gacgaccgccgcggtggccgtttcgaccgcgacgagcgtcgcgggggagaccgcttcgac
cgcaacgaagacatgacggtctaccgactcgctgtcggtaagcgtcagaacgtgcgccca
ggcgccattgtcggtgcccttgcaaacgaaggcggactgaactctaaggactttggacgc
atcagcatctccgttgaccacaccctggtcgagctgccaaagaacttgccatctgatgtc
ctggatcgactctcggatacgcgtatttccggccagctgatcaacatcgaggctgcccca
ggcgctgacatgggaccacgtggcggattccgcaagcgcgatgacttcggtcgacgtgac
cgcgacgatcgccgtggccgtggacgtggcgaccgcgaaggtggtttcggtggccgaggg
cgtggcgaccgcgatggtggtttcggtggccgtggacgtggcgaccgcgatggtggtttc
ggtggccgtggacgtggcgaccgcgattaccgctaa
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