Cellulomonas sp. JZ18: GC089_03385
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Entry
GC089_03385 CDS
T06322
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cej
Cellulomonas sp. JZ18
Brite
KEGG Orthology (KO) [BR:
cej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cej03016
]
GC089_03385
Enzymes [BR:
cej01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GC089_03385
Transfer RNA biogenesis [BR:
cej03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GC089_03385
Prokaryotic type
tRNA splicing ligases
GC089_03385
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
KpnI_N
FTR1_4HB
DUF7971
Motif
Other DBs
NCBI-ProteinID:
QGQ18471
LinkDB
All DBs
Position
730567..731748
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AA seq
393 aa
AA seq
DB search
MPFTRLSDRLVSWASVLDPATREQAERTAELPFVHPHVALMPDAHLGKGATVGSVIPTLR
ALIPAAVGVDIGCGMIAVRTQWTEDGLRAARKPLRALREDVERRVPLSAGAANRRLTDSA
AARVAELERAAAAIGLSPDGYVAGWRLQLGSLGSGNHFIEVTVDEASRVWLFLHSGSRGV
GNRLAQHHIRVAADVCRRRGVTLPDRDLAYVEEGTDEFDHYVRELRWAQDYAVANREEMM
DRVVAALAQHMDADVVEHERVNCHHNFTELEHHHGEDVWVSRKGAIRARAGDAGLIPGSM
GTASYVVVGRGEPESLCSSPHGAGRAYSRSAARRTFTRAQLREAMQGIEYRDTDAFLDEI
PAAYKDIDQVMADAADLVEVRHVLRQVVNVKGD
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgcccttcacccgcctctccgaccgtctcgtcagctgggcctcggtcctcgaccccgcg
acgcgcgagcaggccgagcgcaccgccgagctgccgttcgtgcacccccacgtcgcgctc
atgcccgacgcgcacctgggcaagggcgcgacggtgggcagcgtcatcccgacgctgcgg
gcgctgatcccggcggcggtgggcgtcgacatcggctgcggcatgatcgcggtgcgcacg
cagtggacggaggacgggctgcgcgccgcccgcaagcccctgcgggccctgcgcgaggac
gtcgagcggcgcgtcccgctgtccgccggcgccgcgaaccgtcgcctcacggacagcgcc
gcggcacgcgtcgcggagctggagcgcgccgccgcggcgatcgggctgagccccgacggc
tacgtcgccggctggcggctgcagctggggtcgctcggttcgggcaaccacttcatcgag
gtgaccgtcgacgaggcgagccgggtctggctgttcctgcactcgggctcgcgcggcgtg
ggcaaccgcctcgcgcagcaccacatccgcgtcgccgcggacgtgtgccgccgccgcggg
gtcacgctgcccgaccgcgacctcgcgtacgtcgaggagggcacggacgagttcgaccac
tacgtgcgcgagctgcgctgggcgcaggactacgccgtcgcgaaccgtgaggagatgatg
gaccgggtcgtggccgcgctcgcgcagcacatggacgcggacgtcgtcgagcacgagcgc
gtcaactgccaccacaacttcaccgagctggagcaccaccacggcgaggacgtgtgggtg
tcgcgcaagggcgcgatccgggcccgcgcgggggacgccggcctcatcccggggtcgatg
ggcacggcgtcgtacgtggtggtcggccggggcgagccggagtccctgtgctcgagcccg
cacggggcgggacgcgcctactcgcgctcggcggcgcgccgcacgttcacccgtgcccag
ctgcgcgaggcgatgcagggcatcgagtaccgcgacacggacgcgttcctcgacgagatc
ccggccgcgtacaaggacatcgaccaggtgatggcggacgccgccgacctcgtcgaggtc
cggcacgtgctgcggcaggtcgtcaacgtcaagggcgactga
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