Cellulomonas sp. JZ18: GC089_10900
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Entry
GC089_10900 CDS
T06322
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cej
Cellulomonas sp. JZ18
Pathway
cej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GC089_10900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cej03019
]
GC089_10900
Messenger RNA biogenesis [BR:
cej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GC089_10900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QGQ19638
LinkDB
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Position
complement(2408464..2410149)
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AA seq
561 aa
AA seq
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MSHPHPDLTLPPPLPEGGLRIVPLGGLGEVGRNMAVLEHAGRLLVIDCGVLFPEDHQPGV
DLILPDFDYIRDRLDDIEAIVLTHGHEDHIGAVPYLLRLRRDIPLVGSQLTLAFVEAKLK
EHRITPVTLAVREGQVEQLGVFGCEFVAVNHSIPDALAVAVRTKAGTVLHTGDFKMDQLP
LDGRITDLRAFARLGEEGVDLFMVDSTNAEVPGFVTPEREIGPVLDQVFAESTGRVVVAS
FASHVHRVQQVIDAAVANERLVALVGRSMVRNMGIAAELGYLKVPDGVLVDLKQIEQLPD
DRVVLMCTGSQGEPMAALSRIANNDHKVSVGPGDTVVLASSLIPGNENAVFRVINGLMRL
GARVVHSGNAKVHVSGHASAGELLYCYNILRPRNVMPVHGEVRHLIANAALAVRTGVPAD
RVVLAEDGVVVDLVDGRARVVGAVPCGYVYVDGSSVGELTDAELKDRRILGDEGFVSIFA
VVSSQDGKVLAGPQIHARGVAEQDDVFDEILPQVTAALEDAVRGGATDTHQLQQVMRRVV
GRWVSSRLRRRPMIIPVVVEA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacccgcaccccgacctcaccctgccgccgccgctgcccgagggcggcctgcgg
atcgtgccgctcggcggcctgggcgaggtcgggcgcaacatggccgtgctcgagcacgcc
ggccgcctgctcgtcatcgactgcggcgtcctgttccccgaggaccaccagccgggcgtg
gacctgatcctcccggacttcgactacatccgggaccggctcgacgacatcgaggcgatc
gtcctcacgcacgggcacgaggaccacatcggggccgtgccctacctgctgcgcctgcgc
cgcgacatcccgctcgtcggctcgcagctgacgctcgcgttcgtcgaggcgaagctcaag
gagcaccgcatcaccccggtgacgctcgcggtgcgcgagggccaggtcgagcagctcggc
gtgttcggctgcgagttcgtcgcggtcaaccactccatccccgacgccctcgcggtcgcg
gtgcgcacgaaggccggcacggtcctgcacaccggcgacttcaagatggaccagctcccg
ctcgacggccgcatcaccgacctgcgcgcgttcgcgcgtctcggcgaggagggggtcgac
ctgttcatggtcgactccacgaacgcggaggtgccgggcttcgtcacgccggagcgcgag
atcgggccggtgctcgaccaggtcttcgccgagtcgaccgggcgcgtcgtcgtcgcgtcg
ttcgcgtcccacgtgcaccgcgtccagcaggtcatcgacgcggccgtcgcgaacgagcgt
ctcgtcgccctcgtcgggcgctcgatggtgcgcaacatgggcatcgccgccgagctcggc
tacctcaaggtcccggacggcgtgctcgtcgacctcaagcagatcgagcagctgcccgac
gaccgggtcgtgctcatgtgcaccgggtcgcagggcgagccgatggccgcgctgtcgcgc
atcgcgaacaacgaccacaaggtgtccgtgggcccgggcgacacggtcgtgctcgcgtcg
agcctgatcccgggcaacgagaacgcggtgttccgcgtgatcaacggcctgatgcgtctc
ggcgcgcgcgtcgtgcactcggggaacgcgaaggtgcacgtgtccggccacgcgagcgcc
ggcgagctcctctactgctacaacatcctgcgcccgcgcaacgtcatgcccgtgcacggc
gaggtgcgccacctgatcgcgaacgccgcgctcgcggtgcggacgggcgtgccggccgac
cgcgtcgtgctcgccgaggacggtgtggtggtcgacctggtcgacggccgggcgcgggtc
gtcggtgccgtgccgtgcggctacgtgtacgtcgacgggtcgagcgtcggtgagctcacc
gacgcggagctcaaggaccgccgcatcctcggcgacgagggcttcgtgtcgatcttcgcg
gtcgtgtcgtcccaggacggcaaggtgctcgccgggccgcagatccacgcccggggcgtc
gcggagcaggacgacgtgttcgacgagatcctcccgcaggtcacggcggcgctcgaggac
gccgtgcgcgggggagcgacggacacccaccagctgcagcaggtgatgcgccgggtcgtc
ggccgctgggtgtcgagcaggctgcggcgccgcccgatgatcatccccgtcgtcgtggag
gcctga
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