Cellvibrio sp. KY-YJ-3: D0B88_02500
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Entry
D0B88_02500 CDS
T06234
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cek
Cellvibrio sp. KY-YJ-3
Pathway
cek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0B88_02500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cek03019
]
D0B88_02500
03400 DNA repair and recombination proteins [BR:
cek03400
]
D0B88_02500
Enzymes [BR:
cek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D0B88_02500
Messenger RNA biogenesis [BR:
cek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D0B88_02500
DNA repair and recombination proteins [BR:
cek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D0B88_02500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QEY11223
LinkDB
All DBs
Position
complement(556079..558004)
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AA seq
641 aa
AA seq
DB search
MSSSHTVLEQSFKLNSFRPGQQQVISALLAGRSALAVFPTGGGKSLCYQLPALMLDGLTL
VVSPLIALMKDQVDALQALGIAAARLDSSLSKDEVQAIYDGIYQQQIKLLYVSPERLKNE
RFVQRLARCKISLLAIDEAHCISEWGHNFRPDYLTLADLAKTLRAERVLALTATATPAVA
ADICKQFAIAQADHIQTSFARPNLQLRVTPCGAEARIDLLLSCLQKHPRNAATIVYVTLQ
KTAEEVAAAINAAGLIAVHYHAGLPDDEREQVQNQFMRGEVPIVVATIAFGMGIDKSNIR
AVYHFNLPKSIENYVQEIGRAGRDGEPSLCEMFAVADDIRVLENFTYGDTPTAESLRALV
QHLLTFDDVFDISTYELSNQFDLRPLVLNTALTYLELRGVISAQSPFYTEYKIHFLRDHT
FILAQFDADRAGFLQRLFAAGRMGRKWLSLDMLTVPEQLQESKERISNALDYLAEQGWIE
LTVANLRQGYKNNKTMHNVDQLAELHHYLEQLFAEREARDIQRIHAVLAFANNPACLSQQ
LMYYFGEEGAPPCGICNHCRHTQPALMSLPPVLPLTPAQQTLVAGVKREAHVALQQPRQL
ARFLCGLPSPATSRSRLKSHPAFGALAGVSFSLLIEAAAGA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgtctcatactgttctggaacagtcgtttaaacttaactcctttcgtcccggt
caacagcaagtgattagcgcgctactcgcggggcgatctgcacttgcagtattcccgaca
ggcggaggtaagagtctctgctatcaattgcctgcattaatgctcgacggcttaacgctg
gttgtctcgccgcttatcgcgttgatgaaagatcaagtagatgcattgcaggcgctgggt
attgcggccgcgcgtttggattcttctctgtccaaagatgaggtgcaggccatctacgat
ggcatttatcagcagcagataaaattattgtatgtctcgcccgagcgtttaaagaacgag
cgttttgtgcagcggcttgcgcgctgcaaaatcagtttgttggcgatagatgaagcgcat
tgtatttctgagtgggggcataatttccgcccggattatttaactctggctgatcttgcc
aaaacgttgcgcgctgagcgtgtattggctttaacggcaacagccacaccggcagtggcc
gccgatatttgcaaacaatttgctatcgcccaggcggaccatattcaaaccagttttgcg
cgcccgaatttacaattgcgtgtcacaccttgtggggctgaggcgcgcatcgatttactt
ctgtcgtgcttgcaaaaacatccgcgcaacgctgccaccattgtgtatgtgactttgcaa
aagaccgcagaggaagtggcggcggcaattaatgccgcgggtttaatagcggtgcattat
cacgccgggttgccggatgacgagcgcgaacaggtgcaaaatcaatttatgcgcggcgag
gtgccgatagttgtcgctactatcgcctttggtatgggcatagacaaaagtaatattcgc
gcggtgtaccattttaatttgcccaaatcgattgaaaactacgtgcaggaaattgggcgc
gccgggcgcgatggcgagccttcattatgtgaaatgtttgcggtggcggatgatattcgc
gtattggaaaattttacctatggcgatacgcccacagcagaaagtttgcgggcattggtg
cagcacttgctcacttttgacgatgtatttgatatatcgacttatgaattatccaatcag
tttgatttacgtccgctggtattgaataccgcgctcacttatttagagctgcgcggtgtg
atcagtgcccagagtccgttttataccgaatacaaaatacattttttgcgggaccataca
tttatccttgcgcagtttgatgctgaccgcgctggttttttacagcgtttatttgctgcc
gggcgtatgggcagaaaatggttgtcgctggatatgttgacggtaccggaacaattgcag
gaatccaaagagcgtatcagtaacgcgctggattatttggcagagcaggggtggattgaa
ttaaccgtcgccaatttgcgtcagggctataaaaataataaaaccatgcataacgtcgat
cagctggccgaactccatcattacctggaacaattatttgccgagcgggaggcgcgggat
attcagcgcattcatgcggtgcttgcgtttgccaataatcccgcctgtttgagccagcag
ctaatgtactattttggtgaagagggcgcgccgccctgtggtatctgcaatcactgtcgc
catacgcagccagcgcttatgtctttgcctcctgtattaccgctcacccccgcgcagcaa
acgctggttgcaggtgtgaagcgtgaggcgcatgtagcactgcagcagccgcgacaattg
gcgcggtttttatgtggactgcccagtccggcgactagccgttcgcgccttaaatcccac
cctgcgtttggggcgttggccggtgtttctttttccttattaatcgaagccgccgctggt
gcgtga
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