Cellvibrio sp. KY-YJ-3: D0B88_03650
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Entry
D0B88_03650 CDS
T06234
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cek
Cellvibrio sp. KY-YJ-3
Brite
KEGG Orthology (KO) [BR:
cek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cek03016
]
D0B88_03650
Enzymes [BR:
cek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
D0B88_03650
Transfer RNA biogenesis [BR:
cek03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
D0B88_03650
Prokaryotic type
tRNA splicing ligases
D0B88_03650
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QEY11434
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All DBs
Position
841974..843182
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AA seq
402 aa
AA seq
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MPVKIELNKNAGNGFKPVKIYTRDIENEALTQLKKIAELPIIHSHIAAMPDVHLGIGATV
GAVIPTLNAIIPAAVGVDIGCGMSAVRLSVKSSQLPDNLAAMRSAIERAVPVGLQAHKTV
SIRESACKQMAAGVEWLFEKHPTVMKMLKQPNTLWTKQMGTLGSGNHFIEVCVDENKDVW
IMLHTGSRGIGNAIGQYFIALAKKDMGKHIHNLPDKDLAYFTEGSEHFVDYVTAVNWAQE
YARVNRNEIMGLVLRAIAPFLPKFQADRHAINCHHNYVSREHHFGADVLVTRKGAISARE
GELGIIPGSMGAKSFIVRGKGNTDSFCSCAHGAGRKMSRTAARHAFSKEDLIAQTKGVEC
RKDKAVIDEIPAAYKDIDEVMHNQSDLIEVVHTLKQVLCIKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtaaaaattgaattaaacaaaaatgcgggaaatggttttaaaccggtaaaaatt
tacacccgcgatattgaaaatgaggcgctgacgcaactgaaaaaaattgcggaattgccg
atcattcattcgcatatagcggccatgcccgatgtgcatttaggtattggtgcgaccgta
ggcgcggtgataccaaccttaaatgccattattcccgctgctgtgggtgtggatattggt
tgcggtatgagtgcggtacggctttcggttaaatcatcgcaactgccggacaacctcgcc
gcaatgcgcagtgcaatcgaacgcgcagtgccggtaggtttgcaagcgcataaaacggtg
agcattcgtgaaagcgcatgcaaacaaatggcagcgggtgtggagtggttatttgaaaaa
cacccgacggtgatgaagatgttaaagcaaccgaacaccctgtggactaaacaaatgggc
acgctcggtagcggcaatcattttattgaagtttgtgttgatgaaaataaagacgtgtgg
atcatgctgcacactggcagccgtggaataggcaatgcgattgggcaatattttatcgcc
ctcgccaaaaaagatatgggaaaacacattcacaacttgcccgataaagatttggcctat
ttcaccgaaggcagtgaacactttgtggattacgtgacggcggtaaattgggcacaggaa
tatgcgcgtgtaaatcgcaatgaaattatgggcttggtattgcgcgcaatagcgccattt
ttacccaagtttcaagccgatcgccatgcgattaactgtcaccataattatgtgagccgc
gagcatcatttcggcgctgatgtattggtcacacgtaaaggagccatcagcgcacgcgaa
ggtgagctgggaattattcccggcagcatgggcgctaaatcttttatcgtgcgcggaaaa
ggcaataccgattcgttttgctcctgcgcccacggtgccggtagaaaaatgagccgcact
gcagcacgtcatgcgtttagcaaagaagatttaatcgcacaaaccaaaggtgttgaatgt
cgtaaagataaagcagtaattgatgaaattcctgcggcatacaaagacatcgacgaggtt
atgcacaaccaatctgacttgatagaagtggttcatacactcaaacaagtcttatgtata
aaaggataa
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