Cellvibrio sp. KY-YJ-3: D0B88_04390
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Entry
D0B88_04390 CDS
T06234
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cek
Cellvibrio sp. KY-YJ-3
Pathway
cek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0B88_04390 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cek03019
]
D0B88_04390 (recQ)
03400 DNA repair and recombination proteins [BR:
cek03400
]
D0B88_04390 (recQ)
Enzymes [BR:
cek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D0B88_04390 (recQ)
Messenger RNA biogenesis [BR:
cek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D0B88_04390 (recQ)
DNA repair and recombination proteins [BR:
cek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D0B88_04390 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QEY11573
LinkDB
All DBs
Position
1019757..1021562
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AA seq
601 aa
AA seq
DB search
MKTPLAILNSTFGYHEFRGPQAAVIDALVAGEDVLVLMPTGGGKSLCYQIPALVREGVGI
VVSPLIALMQDQVSALRELGVRAGFLNSSLSPQEMWQTELALQRGELDMLYVAPERLIQP
RTLELFHQIKISLFAIDEAHCVSQWGHDFRSDYLKLELLHREFPQVPRIALTATADVRTR
DEIIARLQLENAQQFINGFDRPNIQYRIAQKNNPKIQLMRFLREEQAGNSGIVYCLSRNK
VEQIAEWLSSEKFTALPYHAGLPANVRQKNQERFLREDNIIMVATIAFGMGIDKPDVRFV
AHLDLPKSIEAYYQETGRAGRDGEPATTLLLYGLEDVVKLRQMMAQSEGSEEFKRNEQQR
LNAMLGLCEITSCRRQSLLRYFGDTLAQPCGNCDCCITPPQTWDATEAVQMALSCVYRTG
QRFGAGHVIDVLRGSNNEKILSFDHHKLTTYGIGKHLSADEWKAIFRQLVARGLLDVNSD
GFGGLVLNESCRAFLRGDEKISLRRDIKAANNSPRRANLGQGIEAEDQGLWNALRSCRKR
LAEEQGVPPYVIFHDATLREMLEFRPLTAEQLRSITGVGESKLKRFGEEFLAVIRTAEYE
E
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactcctctcgctattttaaattccacctttggctatcatgaatttcgcggcccg
caagcggcggtgattgatgcgttagtggccggtgaagatgtactggtgctaatgcccacc
ggcggcggtaaatccctgtgctaccagattccggcactggtgcgtgaaggtgtgggcatt
gtggtatcaccactgatcgcattgatgcaggatcaagtcagtgcgctgcgcgaattgggc
gtgcgtgccgggtttttaaattcgtcgctttcaccgcaagaaatgtggcaaaccgaattg
gcgctgcagcgcggtgagctggatatgctttacgttgcgcccgagcgcttgattcagccg
cgcacattggaattatttcaccagataaaaatttccctgtttgcgattgatgaagcccac
tgtgtatcgcaatggggtcacgatttccgttccgattatttaaagctggaactattgcac
cgcgaattcccgcaagtgccgcgcattgcattaacggcaaccgccgatgtgcgcacgcgc
gatgaaattatcgcgcgcttgcaattggaaaatgcgcagcaatttattaacggctttgat
cgcccgaatattcaatatcgcattgcacaaaaaaataatcccaaaatccagttgatgcgt
tttttgcgtgaagaacaagcgggtaactccggcattgtgtattgcttgtcgcgcaataaa
gtcgaacagattgccgagtggttgagcagtgaaaaatttaccgcactaccctatcacgcc
ggtttacctgccaatgtgcggcaaaaaaatcaggagcggtttttacgcgaagataacatc
attatggtggcgactatcgcgtttggtatgggcatcgataaacccgatgtgcgttttgtc
gcgcatctggatctgcctaaaagtattgaagcttattatcaggaaaccggccgcgcgggg
cgcgatggtgaaccggcaactactttattactttacgggctggaagatgttgttaaattg
cggcagatgatggcgcaaagtgaaggcagtgaagaatttaaacgcaatgaacagcagcgt
ttaaatgcgatgctcggcctgtgtgaaattaccagctgtcgccgccagagtttgctgcgc
tattttggcgataccctcgcgcagccctgcggcaattgcgattgctgcatcaccccacca
caaacctgggacgctaccgaagcggtgcagatggcgctctcctgtgtgtatcgcactggc
cagcggtttggcgcgggccatgtgattgatgtattgcgcggcagcaacaatgaaaaaata
ttgtcgttcgatcatcacaaactcaccacctacggcattggtaaacatttaagtgcggat
gaatggaaagcgatttttcgccagctggttgcgcgtggtttgttggacgtcaatagcgat
ggttttggcggtttggtattaaatgaaagctgccgggcatttttgcgtggcgacgaaaaa
atcagtttgcgccgcgatattaaagcagcgaacaactcgccgcgtcgcgccaacctcggt
caggggattgaagcagaggatcagggtttgtggaatgccctgcgctcctgccgcaaacgc
ctcgccgaagaacagggcgtaccgccctacgtgatttttcacgatgcgactctgcgcgaa
atgttggaattccgcccgcttacagcagaacaattgcgcagcattaccggtgtgggtgaa
agtaaattgaaacgttttggtgaagagtttttagcggtgattcgcacggcggaatacgag
gaataa
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