Cellvibrio sp. KY-YJ-3: D0B88_05035
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Entry
D0B88_05035 CDS
T06234
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cek
Cellvibrio sp. KY-YJ-3
Pathway
cek03420
Nucleotide excision repair
cek03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D0B88_05035
03430 Mismatch repair
D0B88_05035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cek03400
]
D0B88_05035
Enzymes [BR:
cek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D0B88_05035
DNA repair and recombination proteins [BR:
cek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D0B88_05035
MMR (mismatch excision repair)
Other MMR factors
D0B88_05035
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QEY11691
LinkDB
All DBs
Position
complement(1177032..1179254)
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AA seq
740 aa
AA seq
DB search
MDVSLLLDQLNNEQREAVSAPATNQLILAGAGSGKTRVLVHRIAWLIQVEQMSPYSIMAV
TFTNKAAREMRSRLDELFNQNNQYINSRAMWVGTFHGLAHRLLKAHWQDADLPQNFQILD
SDDQLRLIKRIYQVLNIDENKWPHKQAQWYINAQKDEGLRSRHIQETTDPFVRTMLQIYR
AYEEDCQRGGMVDFAEILLRAHELWLNKPHILEHYRQRFPFILVDEFQDTNSVQYAWLRM
LAGKESRVTAVGDDDQSIYGWRGAKIENIQRFSQDFADTHIYRLEQNYRSTGNILKAANA
VIKHNYGRLGKELWTDGDKGDPISLYAAYNEQDEARFIVERIQDWARKGHAKKTIAILYR
SNAQSRVLEEALLREAIPYRIYGGQRFYDRLEIKNAIAYMRLISNRHDDAGFERVINTPT
RGIGGKTVDDIRLFAREQGCSLWTAAEQMLANKVLTARAGNALQSFLSLINKLAQDANEI
DIHGDTPGLDLIAKMVIEDTGLLLFHQNEKGEKGQARGENLQELITACRAFDAEEENEEL
SPLQQFLDTAALDAGETQADEFEDAVQLMTLHSAKGLEFPLVFLAGVEEGLFPHKMSADD
PDRLEEERRLCYVGITRAMEKLFISYAETRRLYGNETFNAVSRFVKEIPEDCIEEVRLKT
AVTRPVSVKRPLTQPSNRQPMYDTGEDTGFRLGQRVTHPMFGEGVILQFEGSGPNAVIQI
KFADTGIKRLVMQYAKLTGL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttccctcctcctcgatcaactcaacaacgaacagcgcgaagccgtatcggcg
ccagcaaccaaccagctgatcctcgctggtgcgggcagcggtaaaacccgcgtgctggtg
caccgtattgcctggttgattcaggtggagcagatgtcgccctattcgatcatggcggtg
acctttaccaacaaagctgcgcgcgaaatgcgcagccggttggatgaactgttcaatcag
aacaatcaatacatcaacagccgcgccatgtgggtgggcactttccacgggctggcccat
cgcctgctcaaagcccattggcaggacgctgacctgccacagaatttccagatcctggac
agcgacgaccagttgcgtctgatcaagcgcatttaccaagtgctcaatatcgacgaaaac
aaatggccgcacaaacaggcgcagtggtatatcaacgcgcaaaaagacgaaggcctgcgc
tcccgccacatacaggaaaccaccgacccttttgtgcgcactatgctgcaaatttatcgc
gcctacgaagaggattgccagcgcggtggcatggtagattttgccgaaatcctgctgcgc
gcccacgaactctggctcaacaaaccgcacatccttgaacactatcgccaacgcttcccg
tttattttggtggacgaattccaggacaccaactcagtgcaatacgcctggctccgtatg
ctggcgggcaaagaatcgcgcgtgaccgcggtgggcgatgacgatcaatccatttacggt
tggcgcggcgcaaaaatcgaaaatatccagcgcttctcgcaggattttgccgacacccac
atttatcgcctcgagcaaaattaccgttccaccggcaatattctcaaagccgccaacgcg
gtgatcaaacacaactacggccgcctcggtaaagagctgtggacggacggcgacaaaggc
gatcccatttcgctctacgccgcctacaacgaacaggacgaagcgcgttttattgtcgag
cggattcaggattgggcgcgcaaaggccacgcgaaaaaaactatcgcgattttgtaccgc
tccaacgcccagtcgcgggtattggaagaagctttattgcgcgaggcaattccctatcgc
atttacggcggccagcgcttttatgatcgcctcgaaattaaaaatgcaattgcgtacatg
cgcttgattagcaaccgccacgatgacgccggttttgaacgggtgattaataccccgacg
cgtggtattggcggaaaaaccgtggacgatattcgcctgtttgcacgcgaacaaggctgc
tctttgtggacagctgcagagcagatgctcgccaataaagtcctcaccgcacgcgcgggc
aatgcgctgcaatcctttttaagtttgattaacaaactcgcgcaggatgccaacgaaatt
gatattcacggcgatacgccgggcttggatttaatcgccaaaatggtgatagaagacacc
ggtttgttgctattccatcaaaatgaaaaaggcgaaaaaggccaggcgcgcggcgaaaac
ttgcaggaattaattaccgcctgccgcgcctttgatgcggaagaagagaatgaagagctc
tcacccctgcaacaatttttagatacagcggcactcgatgccggtgaaacccaagccgat
gaatttgaagatgcagtgcaattaatgaccctgcactcggccaaggggctggaatttcca
ctggtgtttttagccggtgtggaagagggtttgttcccgcataaaatgtcggcggacgac
ccggatcgattggaagaagagcgacgtctgtgttacgtgggcatcactcgcgctatggaa
aagttatttattagttacgctgaaacccgtcgcttgtacggcaatgaaacctttaacgcg
gtgtcccgttttgtgaaagaaattcctgaagattgtatcgaagaagtgcgtttaaaaacc
gcagttacccgcccggtgagcgttaaacgcccacttacccaaccgtccaatcgccaaccc
atgtatgacactggcgaagacaccggttttcgcctcggtcagcgcgtgactcaccccatg
tttggcgaaggtgttattttgcaatttgaaggctcgggccccaacgccgtgattcaaatt
aaattcgccgataccggcatcaagcgtctggtgatgcaatacgcgaagttgacggggcta
taa
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