Cellvibrio sp. KY-YJ-3: D0B88_05075
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Entry
D0B88_05075 CDS
T06234
Name
(GenBank) pseudouridine synthase
KO
K18197
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
cek
Cellvibrio sp. KY-YJ-3
Brite
KEGG Orthology (KO) [BR:
cek00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
D0B88_05075
Enzymes [BR:
cek01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
D0B88_05075
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GFIT
Motif
Pfam:
RGL11_C
RGI_lyase
CBM_2
FG-GAP
FG-GAP_3
fn3
CBM49
Motif
Other DBs
NCBI-ProteinID:
QEY11698
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Position
1189070..1191691
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AA seq
873 aa
AA seq
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MEQSQIAPSQPIHLPTIDPPPPSRRLPKMLRNCVCAGLIGLAAAPVFAARQAEYLDRGVV
ALPAGNGVFISWRMLGDDPAAVGFNVYRNGSKITATPITNSTNYLDSSGTTSAAYTIRPV
INGVEYAANAAKATWSNPYLAVNLNRPNGGTTPSGEAYTYSPNDLSVGDLDGDGQYEIVV
KWDPSNAKDNSQSGYTGNVFIDAYEMNGTQLWRIDLGRNIRAGAHYTQFMVYDLDGDGKA
EVALKTAPGTRDAAGTVLGASNANTDYRNSSGYILSGPEYLTVFNGQTGVAMATTDYLPA
RGTVSSWGDNYGNRVDRFLAGVGYLDGTRPSLIMARGYYTRAVLVAWDWRNGQLTRRWTF
DSNSSGNGAAAGQGAHSLTVGDVDQDGRDEIVYGAATINDNGTLLYSTGLGHGDALHLSD
FLPSRPGLEVFMVHESPSSYGNHGVEMHDAKTGQIIWSFQGGGDIGRGVIMDIDPRTPGA
ESWASAGGINSATGSQITTSKPASINFAAWWDGDLLREQLNNTMIDKWNYSNNSSSRLLT
AYNYGAASNNSTKATPGLSADLLGDWREEVIWRHENNSQLLIFSTNTITSHKLRTLMHDS
QYRTAIAWQNVGYNQPPHPGFFLGDGMATPPAPDLYFVGTNPNAGPVSSGSSSSSSSVAP
VAVTLGGSAGNGQVALSWSASGTISAIEIYRDTDADPAGRTRIASLAASTRSYTATDLSN
GTAYWFWVKYTANGVSYNSNAFSATPTAGSNSSAVVTSSALSSVASSSASSAVSGGNCSY
IVSNNWGSGFTGTIRITNTGTSAINNWNVSWNYSGSTRITSSWNATLSGNNPYSATPAGW
NASIQPGQSAEFGFQGTHSGTAEIPVVTGSACN
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggaacaatcacagatcgccccgtcgcagcccatccatttacccactattgatccaccg
ccgccttcgcgccgattgcctaaaatgctgcggaattgtgtatgtgccggccttatcggg
cttgcggcggcgcccgtttttgcggcgcgccaagcggaatatctggatcgcggtgtcgtt
gccctgcccgcaggcaatggcgtgtttatcagttggcgcatgctcggcgatgacccggcg
gcggttggttttaatgtctatcgcaacggcagcaaaatcaccgccacgcccattaccaac
agtaccaattaccttgatagcagtggcaccaccagcgcggcctacaccattcgcccggta
ataaacggcgtcgaatatgcagctaacgcggccaaagcgacctggtcaaacccctatctt
gcagtgaatttgaatcgcccgaacggtggcaccacgcccagcggcgaggcttatacctat
tcccccaatgacttgagtgtgggcgatctggacggcgacgggcagtatgaaattgttgtg
aaatgggacccctccaacgccaaggacaactcccaaagcggctacaccggcaatgtgttt
atcgatgcctacgagatgaacggtacccagttgtggcgtattgatttgggccggaacatt
cgcgccggcgcccactacacgcaatttatggtgtacgacctggatggcgacggcaaagcc
gaagtggcgctgaaaaccgcccccggcacccgcgacgctgcaggcacagtgcttggcgcc
agcaatgccaacaccgattaccgcaatagtagtggttatattctcagcggccctgaatat
ctcaccgtatttaacggccagaccggtgtcgccatggcaacgacggattatttgcccgcg
cgcggcacggtcagcagttggggcgataattacggcaaccgggtggatcggttcctcgct
ggcgtcggctacctggatggcacccgccccagcctgatcatggcgcgcggttattacacc
cgcgcggtactcgtcgcctgggactggcgcaacggccaactcacccgccgctggacattt
gacagcaatagcagcggcaatggcgccgctgcgggccaaggcgcccacagcctcactgtg
ggcgatgtggatcaggacggcagggatgaaatcgtctatggcgccgccactattaacgac
aacggcaccctgctctattccaccggcctcggccatggcgatgcgctgcacttgagcgat
ttcctgcccagtcgccctggcttggaggtgtttatggtgcatgaatcgcccagtagctac
ggcaaccacggcgtggaaatgcacgacgccaaaaccggccagatcatctggagttttcag
ggcggtggcgatatcgggcgcggcgtgattatggatatagacccacgcaccccgggtgcc
gagagctgggccagcgccggtggtatcaattcggcgaccggcagccaaatcaccaccagc
aaaccggcctcgatcaattttgccgcctggtgggatggcgacctgctgcgcgaacaactc
aataacaccatgatcgacaagtggaattacagcaataacagcagctcgcgcctgctcacc
gcctacaactatggcgccgcttccaacaacagcaccaaagcgacaccggggctctcggcc
gacctattgggtgactggcgtgaagaggtgatctggcgccacgaaaacaacagccaactg
ttgatcttctccaccaacactatcacttcccataagctgcgcacgctaatgcacgacagc
cagtaccgcaccgccatcgcctggcaaaacgtaggttacaaccagccgccgcaccccggt
tttttcctcggcgatggtatggcgacaccgcctgcaccggatctgtattttgtcggcacc
aaccccaacgctgggccggtaagtagcggctcatccagcagttcaagttctgtggcgccc
gtagcggtcaccctcgggggcagcgccggcaatggtcaagttgcgctcagttggtctgcg
agcgggacgattagtgcgatagaaatctatcgcgacaccgatgccgaccccgccgggcgt
acgcgcatcgcatcgctcgccgccagcacccgcagctataccgcaactgatctcagcaat
ggcacagcctattggttctgggtgaaatacacggcgaatggtgtgtcatacaactccaat
gccttcagcgctacacccactgccggttccaacagcagtgcagtcgtcaccagcagtgcg
ctttccagcgtcgcctcaagttcggcttccagtgcagtgagcgggggcaactgcagctac
atcgtcagcaacaactggggttcgggtttcaccggcaccatccgcattaccaatacgggc
accagcgcaatcaacaactggaatgtgagttggaactacagcggcagcacgcgcatcacc
agcagctggaacgcaaccctcagcggcaacaacccctacagcgccacccccgccggctgg
aatgccagcattcaacccggccagtcagcagagttcggttttcaaggaacccactccggc
acggcagaaatccccgtggtaacgggttcagcgtgtaattaa
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