Cellvibrio sp. KY-YJ-3: D0B88_09860
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Entry
D0B88_09860 CDS
T06234
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cek
Cellvibrio sp. KY-YJ-3
Pathway
cek03030
DNA replication
cek03430
Mismatch repair
cek03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D0B88_09860
03430 Mismatch repair
D0B88_09860
03440 Homologous recombination
D0B88_09860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cek03032
]
D0B88_09860
03400 DNA repair and recombination proteins [BR:
cek03400
]
D0B88_09860
Enzymes [BR:
cek01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D0B88_09860
DNA replication proteins [BR:
cek03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
D0B88_09860
DNA repair and recombination proteins [BR:
cek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
D0B88_09860
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HROB
DUF7292
Motif
Other DBs
NCBI-ProteinID:
QEY12529
LinkDB
All DBs
Position
2302809..2306342
Genome browser
AA seq
1177 aa
AA seq
DB search
MPAANFVHLRLHTEFSLSDSLVRIKALVKRVAELNMPACAITDQTNFYGLIKFYKAAQSA
GVKPIAGSDFWIASTDSEGKPTLITLLAMNDQGYKNIIELISRAWRQGQQQGVAYLQREW
LSEFSDGVIALSGGKLGDVGMALLGGRAAQAQELLQGWMQDFPGRFYLELQRTGRENDEN
HLHAAVALAAEMNCPVVATNDVRFLKASEFEVHEARVCISEGRTLDDPRRERRYSDQQYL
RSAEEMAELFSDIPEAIANTIEIAKRCTITIQMGKYFLPEYPVPEGMTEAEFFRKISHEG
LDQRLERILDKSTADYAERRKVYEDRLNFELDIINQMGFPGYFLIVMDFIQWAKDHDIPV
GPGRGSGAGSLVAYSLKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDKVISYV
ADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPPTPGMTLAQALEEE
PQLKEFIAVDGDAGEIWEMAVQLEGLTRNVGKHAGGVVIAPTKLTDFSPLYCDETGGGLV
TQFDKGDVEEAGLVKFDFLGLRTLTIIDWARIMIDKQRIKKGEAPLDISAIPLDDPKTFG
LLKRAETTAVFQLESRGMKDLIKRLQPDNIEDLIALVALFRPGPLESGMVDDFINRKHGR
AQVAYPDAKFQHQSLKPVLEPTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPE
EMAKQREVFESGAKNQGVDPELAIKIFDLVEKFAGYGFNKSHSAAYAIVSYQTAWLKAHY
PAHFMAATMSSDMDKTDKVVTFIEECRTMKLKLLPPDVNSGEFHFTVDDAGRIIYGLGAI
KGLGEGPVESIIAARNEGGPFKDLFDFCARVDPRKVNKRALEAIIRSGAADNLGPTANTP
QHNIDHDRAVMFAAMSEAVKTAEQAMANTNAGMMDLFGAVMASDESNSDVYADFRRVRTW
TMKERLHAEKETLGLYLTGHPIDEYESELTHLVSSRISNLKPEKGSQTISGLVISQRVVK
TKRGDNMAIVTLDDRTGRMDVTLFAEVFNAARDVLLKDGLLVVSGQVRYDDFSGMLKMSA
DNIRLLSDVRQEKVRELWLELESGLLPANFSRDLNDILDPYRQSPQQDARCAIVVDYIRS
DARAQLRFGNEWNIRPEDELLQHLRDAYGSAKVKLVY
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcagcaaattttgttcacttgcgtttacacacagagttttcgctaagcgatagt
ttggtgcgcattaaagcgttggttaagcgtgtggcagaactaaacatgcctgcctgtgct
attaccgatcaaaccaatttttacggtctaatcaagttttataaggccgcccaaagtgca
ggtgtaaaaccgattgccggtagcgatttttggatcgccagtactgacagtgaagggaaa
ccgacattaattactctgctcgccatgaatgatcagggttataaaaatattattgaatta
atttcacgtgcctggcgtcaaggccagcagcagggtgtagcttatttacagcgcgaatgg
ctgagtgagtttagtgatggtgtaattgcattatccggtggcaagttaggtgatgtgggt
atggcgctgctcggtgggcgtgcagcgcaggcgcaggagttattacagggatggatgcaa
gattttcccgggcgtttttatttggagttacagcgcacaggtcgtgagaatgatgaaaat
catttgcatgcggcagtcgcccttgctgccgagatgaactgccccgttgttgcgacgaat
gatgttcgttttttaaaggccagcgaatttgaagtgcatgaggcgcgagtgtgcatcagt
gaaggccgcacgcttgatgatcctcggcgtgagcgccggtatagcgatcagcagtatttg
cgttcggccgaagaaatggctgagttattcagtgatattcctgaggcaatcgccaataca
attgaaattgccaaacgttgcaccattaccatccaaatgggtaaatactttttaccggaa
tacccagtgccggaaggcatgacggaagcagagtttttccgcaaaatttcccacgaagga
ttggatcagcggttggagcgcattctggataagagcaccgcagattatgctgagcggcgt
aaagtctatgaagatcgtttgaattttgaattggatattattaaccagatgggattccct
ggttattttctgatagtaatggactttatccagtgggcgaaggatcacgatatcccggtc
ggacctggccgtggttcgggtgcgggatcgctggttgcctactcattaaaaattactgat
ctcgacccacttgaatacgatttgctgttcgagcggtttctaaaccctgagcgggtttcc
atgccggacttcgatatcgatttttgcatggacaatcgcgataaggttatttcttacgtg
gccgataattacggtcgcgatgctgtaagccaaatcattaccttcggtaccatggctgca
aaagcggtagtgcgcgatgtggcgcgggtgcagggtaaatcttacggccttgccgataaa
ctttccaaaatgattccgcccacaccgggtatgactctcgcacaggcattggaggaagag
ccgcagctaaaagaatttattgcggttgacggtgatgccggtgaaatttgggagatggca
gtacagcttgaaggtcttacgcgcaacgtcggtaaacatgccggtggtgtagttattgcg
cccactaaactcaccgatttttcaccgctttattgcgatgaaaccggcggtggtttggta
acccaattcgacaaaggtgacgtagaagaagcgggcttggtgaagttcgacttcctcggg
ctgcgcacgctcaccattatcgattgggcgcgcattatgatcgataagcagcgcatcaaa
aaaggcgaagcaccactcgatatcagcgctattccactcgatgatcctaaaacctttggt
ttattaaaacgcgcggaaaccacagcggtgttccagttggaatcgcgcggcatgaaagat
ctgatcaaacgtttgcagccagataatattgaagatttgattgcactggtggcgctattc
cgtcccggccccctggagtcgggcatggtagatgactttatcaaccgtaaacacggtcgc
gcgcaagtggcctatcccgatgcaaaattccagcaccagagtttaaaaccggttcttgaa
ccaacttatggcgttattgtttaccaggaacaggtaatgcaaattgcgcaggtacttgcc
ggttatacactcggtggtgcggacatgttgcgccgtgcaatgggtaagaaaaaaccggaa
gaaatggccaagcagcgcgaagtatttgaaagtggtgcaaaaaatcagggtgttgaccca
gagctcgcaattaaaatttttgatttggtggaaaaatttgcgggttatggatttaacaaa
tcccactctgcggcttacgcgattgtgtcttatcaaactgcttggttaaaagctcattac
cctgcacattttatggcggcgactatgtcgtcggacatggataaaaccgataaggtcgtt
acctttatcgaagaatgtcgcaccatgaaattaaaattgttgccgccggatgtaaactcc
ggtgagtttcattttacggtggatgatgcaggtcgaattatttacggtttgggtgcaatc
aaaggcttgggcgaaggcccagttgaatccattattgcagcgcgtaatgaaggtggtccg
tttaaagatttattcgatttttgtgcgcgtgttgatccacgcaaagtaaacaagcgtgcc
ttggaagccattattcgttccggtgctgcggataatcttgggccgacagccaatactccc
caacataatattgatcatgatcgtgcggtaatgtttgcggcaatgagcgaagcggtaaaa
actgcggagcaggcgatggccaataccaatgctggcatgatggatttatttggtgcagtg
atggcgagtgatgaaagtaactccgatgtttatgcggattttcgtcgcgtgcgtacctgg
actatgaaggagcggttacacgcagaaaaagaaacgcttgggttgtatcttactggtcac
cccatcgatgaatatgaaagtgaattaactcacttggtgagttcgcgtatttctaatctc
aaaccggaaaagggcagtcaaactatttctggcttggtgatttcccagcgtgtggtgaaa
accaagcgcggcgataatatggcgatagtgacactcgatgatcgtaccgggcgtatggat
gtcaccttatttgcggaagtgtttaatgccgcgcgtgatgtattgttaaaagatggtctt
ttagtggtgagtgggcaggttcgttacgacgactttagcggcatgctaaaaatgagtgcg
gacaatattcgtttgttgtctgacgtgcgtcaggaaaaagtgcgtgagttgtggctggaa
ttggaatcgggtcttctgccggcaaattttagtcgcgacctaaacgatattctcgaccct
taccgccagtcaccccagcaggatgcgcggtgcgcaattgttgtcgattatattcgcagc
gatgcgcgagcccagttgcgttttggcaatgagtggaacatacgtcccgaggatgaattg
ctacagcatctacgcgatgcttacggcagtgccaaagtgaagttggtgtattaa
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