Cellvibrio sp. KY-YJ-3: D0B88_11370
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Entry
D0B88_11370 CDS
T06234
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cek
Cellvibrio sp. KY-YJ-3
Brite
KEGG Orthology (KO) [BR:
cek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cek03016
]
D0B88_11370
Enzymes [BR:
cek01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D0B88_11370
Transfer RNA biogenesis [BR:
cek03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D0B88_11370
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QEY12800
LinkDB
All DBs
Position
complement(2667285..2669279)
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AA seq
664 aa
AA seq
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MLNKDALQQLSQLKSTIVAAKDVAQGIVRTTTKRFGFLILDDGREAFIDPEQMMRVLPDD
RVEAEINTNSKGQFEAKLTQLIKPGLGEFVGKYVNKGSTDFVEPDVPNFNRWLFIPPQER
KGYKVGDLIHCTIARHPFNSEGKTQVHILNRIGTLDEPGVESRYTIAKFHMPFEWQAPAQ
SQAGGINWSPLTFDNGELDLTHLPFVTIDSENTRDMDDAIYITTVDSGWELITAIADPSK
HIDFGSPLELAARARASTHYLLGQTVTMLPVDLSHDTYSLVPEQKRPALICRMQIAQDGS
ITQFEFAEALIRSQSKLSYQGVYDALTAEVSTLGAPAHIHDMLVELKAFAQARAQYRQLN
ALVMEDRPDYAFILNDVKKIDHIEKRERNIAHRMIEEAMLVTNICAGELFLQHPGCGIFS
SHVGFRPERLNDALSLIQEDRPDLIPGDLTQLENFTTLFRELRLNADNNPVNNRLHSLLQ
RMLQAGSITFEPVGHFGLGFNAYAMVTSPIRRYNDLFNHLAIKRILRGLPALELNDKKQF
AEQLQNQLNNGRQACRYVESWLGCQYANQHVGSVHSGSIALVNSFGIGIKLDDWGLDGYA
LLAPKDGEIKAQFDSRRLSLTIEGNTYRLDDKVNVLIHSVDIDKRKINLELISEETASRL
SAWL
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgctcaataaagatgctcttcaacaactctcgcaattaaagtccacgattgtcgccgcc
aaagacgttgcccaagggattgttcgcactaccaccaagcgttttggttttttaattcta
gacgatggacgcgaggcttttatcgaccccgagcagatgatgcgcgtgctgcccgatgat
cgggtcgaagcagagatcaacaccaacagcaaaggtcaatttgaagcaaagctcactcaa
ctgatcaaaccgggactgggtgagtttgtaggcaagtatgtcaacaagggttctaccgat
tttgtcgaacctgacgtgcctaactttaatcgctggttgtttattcccccgcaagagcgc
aagggctacaaagttggcgatttaattcactgcaccattgcgcgccacccgttcaacagc
gaaggcaaaacccaggtacatatactgaatcggattggcaccctcgatgaaccgggggta
gagagccgttataccatcgcaaaattccatatgccgtttgaatggcaagcacccgcgcaa
agtcaggcgggcggcattaattggtctcccttgacctttgacaatggcgagctggactta
acccacctgccctttgtcactatcgattctgaaaacacccgcgatatggatgatgcaata
tatatcaccactgtggacagcggttgggaattgattacggcaattgccgacccaagcaaa
cacattgatttcggcagcccactggaattagcggcgcgcgcgcgcgccagcacccattat
ttgcttggccaaaccgtaactatgttgccggtcgatctgtcacacgacacctactcactg
gtgccggaacaaaaacgccctgcattgatttgccgtatgcaaattgcacaggatggcagc
attacacaatttgaatttgctgaagcactcatccgctcacaatccaaattgagctatcaa
ggtgtttatgatgcgctcaccgctgaagtatctacccttggcgcaccagcacatattcac
gacatgctggtcgaacttaaagcgtttgcacaagcacgcgcacaatatcgccaactcaat
gcgctggtgatggaagatcgccccgattacgcattcattttgaacgatgtgaaaaaaatc
gatcacattgaaaagcgcgagcgcaatattgcgcaccgcatgatcgaagaggcgatgctg
gttaccaacatctgtgccggggaattatttttgcagcaccctggctgcggtattttttcc
agccatgtgggttttcgccctgaacgcctcaacgatgcactttcattaattcaagaagac
cgccccgatctgataccgggtgatttaacgcaactggaaaatttcaccacattatttcgc
gaattgcgtctgaacgctgacaacaatcccgtcaataatcgcctgcactcattattacaa
cgcatgctgcaagctggctcaatcacctttgaaccggtggggcattttggtttaggcttt
aacgcttatgcgatggttacttcaccgattcgccgctacaacgacttattcaatcacctg
gcgattaaacgtattttgcgcggcttgccggcgttggaattaaacgataaaaaacagttt
gccgaacaattgcaaaatcaattaaacaacggacgccaagcctgccgctatgtagaaagc
tggctcggctgccaatacgccaaccaacatgtcggtagcgtgcacagcggaagtattgca
ctggtaaattcgttcggtatcggtattaaactggatgactggggcctggatggttacgcc
ctactggcacccaaagatggcgagattaaagcgcaatttgattcgcgtcgtttaagtcta
accattgaaggcaatacttaccgtttggacgacaaagtgaacgtgttaatccacagtgtt
gatatcgataaacgtaaaatcaatctggaattaatcagcgaagaaactgcctcacgctta
agcgcttggctgtaa
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