Cellvibrio sp. KY-YJ-3: D0B88_13110
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Entry
D0B88_13110 CDS
T06234
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
cek
Cellvibrio sp. KY-YJ-3
Brite
KEGG Orthology (KO) [BR:
cek00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
cek01011
]
D0B88_13110
Enzymes [BR:
cek01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
D0B88_13110
Peptidoglycan biosynthesis and degradation proteins [BR:
cek01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
D0B88_13110
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Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM1_NFP_LYK
LysM2_CERK1_LYK3_4_5
LysM2_NFP
LysM_RLK
LysM3_NFP
NMB0315_dom_I
SLT_2
Rad60-SLD
ChapFlgA
Motif
Other DBs
NCBI-ProteinID:
QEY13105
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Position
complement(3085646..3087193)
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AA seq
515 aa
AA seq
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MSKPRPLIRLSTSLLLTATLLVTGCSSLPDKNQETAEAKTKTVKKSTEKHAVKKPTETIE
ATNLWDDIIKGYGLPTVSDEKVNKNLRWLANNQRYLDRVTQQSRPYLHYVASQLKANDLP
LELALLPIVESAYDPFASSPSRALGIWQFMPQTGRNFGLTQNHWYDGRRDIVASTDAAVR
YLKRLNTMFNGDWFLAVAAYNAGEGTVRRAIERNRKQGKGTDFWSLPLSQQTQSYVPQLI
ALSKVVANPAKYDLELAAIPNNPYFTTVNVSTPVDLAQAARMAEIDPKELRNLNAGYNRW
ITNPSGPHQLLVPVADAAQFTLTLDKLPQIKPMQIAGDYKVKSGDTLGALAKRYGTSVAA
IQAANNLKSTNLRVGQSLSIPGQTPVNSPYAIQAEQEIAQRNQKNTGIHYTVKSGDSFWT
IAKSHNTSVKNLLQWNDLSANAKLKPGQKLLIADKAIAQKDGNKITYQIKSGDTLNKIAN
KFSVSKQDILSWNKVKNESYIHPGQELTIFLSAKN
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaccgcgccctcttattcgattgtccaccagtttattgctcaccgccacccta
ctggtaactggctgtagcagccttcccgataaaaatcaggaaactgcagaagctaaaacc
aaaacggtaaaaaaatcgaccgaaaagcatgccgtaaaaaaaccgaccgaaacaatagaa
gccacaaatctgtgggatgacattattaaaggttatggactgccaaccgttagcgatgaa
aaagttaacaaaaatttgcgctggctcgcaaacaatcagcgttatctggatcgggtaacc
caacagagccgcccctacctgcactatgtagccagccaattaaaagccaacgatttaccc
ttggagcttgcactccttcccatcgtagaaagcgcttacgacccttttgcatcctccccc
agtcgcgccttgggaatatggcaattcatgcctcaaactggccgcaattttggccttact
caaaaccactggtatgacggcagaagagacatagttgcctcaacagatgcagccgtccgc
tacctcaagcgcttgaacactatgtttaatggcgattggtttttagctgtcgccgcttat
aacgcaggtgaaggcactgtacgcagagccattgaacgaaatcgcaagcaaggaaaaggc
actgacttctggtcattacccctatcacagcaaacacagtcctatgtgccgcagttgatt
gcactctccaaagttgtcgccaacccggctaaatacgatcttgaattagcagccatacca
aacaacccctatttcaccactgtcaatgtaagcactcctgtagatttggcacaggcagca
cgcatggcagagatagatccaaaagaattgcgcaacctcaatgcaggctataaccgttgg
attaccaacccatcgggtccacatcagcttttggtacccgtggcagatgctgcgcagttc
accctaacactcgacaagctcccccaaattaagcccatgcaaattgctggtgattacaaa
gtgaaatccggcgataccttgggcgcactggccaaacgctacggcaccagcgttgctgcc
atccaagcggccaacaatctcaagtctacgaatttaagagtcggtcaaagcctgagcatt
cccggccaaacaccggttaattctccttatgcgattcaagccgagcaggagattgcccag
cgcaatcaaaaaaacaccggcattcattacaccgttaagtctggtgacagtttttggact
attgcaaaaagccacaacaccagtgttaaaaacctgctgcaatggaatgatttgagtgca
aacgccaaactcaagccaggccaaaagttactgattgccgacaaggcgatagcacagaaa
gatggcaataaaatcacttaccaaataaaaagtggtgacacactgaataagatcgccaac
aaattctctgtatctaaacaagatattctgagctggaacaaagtgaaaaatgaaagctat
attcaccctggtcaagaattaactattttcttatctgccaaaaattaa
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