Cellvibrio sp. KY-YJ-3: D0B88_14285
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Entry
D0B88_14285 CDS
T06234
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
cek
Cellvibrio sp. KY-YJ-3
Brite
KEGG Orthology (KO) [BR:
cek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cek03016
]
D0B88_14285 (rnd)
Enzymes [BR:
cek01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
D0B88_14285 (rnd)
Transfer RNA biogenesis [BR:
cek03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D0B88_14285 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QEY13309
LinkDB
All DBs
Position
complement(3365173..3366309)
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AA seq
378 aa
AA seq
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MLIPTEPIWIDQDDQLAELCARWQQQAALAIDTEFMRSDTFYPIAGLLQIGDGKGCYLID
PLAIGNLEPLRELMLNPAVTKVLHSCSEDLEVFQCWLGVVPAPLFDTQVAAAFAGLSFGL
GYANLVKNLLTIEIPKEETRSDWLQRPLSAAQLKYAALDVAHMLIVYGKLLQLLKTTERL
EWVKSDCADLISNARKADDFSEAYQKVGFAWKLREQELLILKQLCIWRETEARARNIPRN
RLIKEPSLWEIARKRIQDVTQLQRVPDIPSRTLKNDSETILQIVSDALAMDEAAWPARLD
PPLAQSEGPLMKALKNYVREYAEQAQLPPEVLIRKKDYEHLVRSGMNGGEYRLPERLLGW
RFDLIGEGLLRIVRQQNV
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgctaatacccactgaacctatctggattgatcaggacgatcaactcgccgagctttgc
gcgcgctggcaacagcaagcggcgctggcgattgatactgaatttatgcgcagcgatacc
ttttatcccattgcaggtttgctgcagattggcgatggcaagggatgctacttaattgat
ccgcttgcgattggcaatctcgagcctttgcgcgaattgatgctaaaccctgcagtcacc
aaagtattgcattcttgttcagaagatctggaggtgtttcagtgctggttgggagtagtg
ccggcgccattatttgatacacaagtggcagccgcatttgcaggtttgagctttgggttg
ggttacgccaatttagtcaaaaacctgctaactattgaaattcccaaagaagaaactcgc
tcggattggttgcagcgcccgctcagtgcagcgcaattaaaatacgccgcacttgacgtt
gcgcatatgctgattgtgtatggaaaattattgcagttattaaaaacaaccgagcgtttg
gagtgggtgaaaagtgattgtgctgatttgataagcaatgcgcgcaaagcagatgatttt
agcgaggcgtatcaaaaagtaggttttgcctggaaattgcgtgaacaggagttattaatt
ttaaagcagctttgtatttggcgcgaaactgaagcgcgggcacgcaacattccgcgcaat
aggttaataaaagagccttcattatgggaaattgcgcgtaaaagaattcaggatgtgacg
caattacaacgtgtaccggatattccctcgcgcactttaaaaaatgatagtgaaactatt
ttacaaatagtcagcgacgctttggcaatggatgaagctgcatggcctgcgcgactcgat
ccgcctttagcgcaaagcgaaggcccgctgatgaaggcgttgaaaaattatgtgcgcgaa
tacgccgaacaagcccagttgccgcccgaagtattgattcgcaaaaaggattacgagcat
ttggttcgctccgggatgaatggtggcgaatatcgtttgcccgagcgtttattgggctgg
cgttttgatctaattggcgaaggcttgttgcgtattgttcggcaacagaatgtttag
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