Cellvibrio sp. KY-YJ-3: D0B88_18240
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Entry
D0B88_18240 CDS
T06234
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cek
Cellvibrio sp. KY-YJ-3
Pathway
cek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0B88_18240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cek03019
]
D0B88_18240
03016 Transfer RNA biogenesis [BR:
cek03016
]
D0B88_18240
Enzymes [BR:
cek01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D0B88_18240
Messenger RNA biogenesis [BR:
cek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D0B88_18240
Transfer RNA biogenesis [BR:
cek03016
]
Prokaryotic type
tRNA degradation factors
D0B88_18240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
CSD
RNase_II_C_S1
OB_Dis3
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
QEY14030
LinkDB
All DBs
Position
complement(4255652..4258531)
Genome browser
AA seq
959 aa
AA seq
DB search
MSKRKSPFKDPFAAREAEKYENPIPSREYILELLDTAAEPVTHEQMCAMLKLTGEDQIEA
LRRRLIAMARDGQLISNRRDAYVRLDKIDVVRGRVQGHRDGYGFVIPSEGGEDIYLHNRQ
MRKVFDGDEVLVRLSGEQYRGKEEGAIIEVLIRNTTQLAGRFFNEEGVQFVRPENPRITH
DIMIPFGAYGGAKHGQIVVAEITQQPDKNRLPTGRVVQVLGDHMAPGMEIELAIQAHGIP
SVWPEAVIAEAARLSHEVEEKDKLHRVDVRHLPFVTIDGEDARDFDDAVLCERRKGGWRL
YVAIADVSHYVQVESALDVEARARGNSVYFPDYVVPMLPEALSNGLCSLNPNVDRLCMIC
EMNISTAGRITGYQFYEGVMHSHARLTYTKVGEILTGEGETRAALREEYKAVIPQLELLH
KLYECLRAARDERGAIDFETTETRIQFNDERKIERIVPIKRNDAHKLIEECMLCANVCAA
TFIEKHNLVGLFRVHEGPTETKLANLRAYLSELGLGLAGGDKPTPGDYQQLLQMIQDRSD
GHLIQTVMLRSLRQAMYQVENHGHFGLGYEAYTHFTSPIRRYPDLLVHRAIRSVIRSTEP
TTHVRRVDTAKAIPKKFIYPYTAAEMLVFGEQCSRTERRADEATRDVVSWLKCEYLRDQV
GAIYDGHVSAVTSFGLFVELNELYVEGLIHITSLPHDYYRFEPAQHRLMGERTRKVFGLG
DSLVVRVVRVDLDNRKIDFELESEAAIRRPKSQVKPKVAKRDAKNAAKKSAANKQDVKQV
VAKPAIATAVPEKAATKKPATKNTATKKTTAKKPAVKKPASVKPASTKPEGSKSGGAKAA
VAKVTGKKLAATDVAAAKPAVKKSNSKVSVAKAESAGAAKKTAAPKTAAVKKVAAAVPAK
KTTKAASEVSHGRKNAKATSKAAPATVQPSPSGATKGKAVARAAAPTAKKPVAKAKTTK
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaacgtaaatcccccttcaaagacccttttgccgcacgcgaagctgagaagtat
gaaaaccccattcccagccgcgaatacattcttgagcttctggataccgctgccgagcca
gtgacccatgagcagatgtgcgcgatgcttaagctgaccggcgaagaccagattgaagcc
ttgcgccgtcggttgattgcgatggcgcgcgatggtcagctgatcagcaaccgccgcgat
gcctatgtgcggctggataaaattgatgtggtgcgtggacgggtgcaggggcatcgcgat
ggttatggctttgtgatcccctctgagggcggcgaagacatttatttacacaatcgccag
atgcgcaaagtgtttgatggcgatgaggtgctggtgcgcctttcgggtgagcagtatcgc
ggtaaagaagagggcgcgattattgaagtgctgatccgcaataccactcaattggcgggg
cgcttctttaatgaagagggggtgcagtttgtgcgcccggaaaacccacgtattacccat
gacataatgatcccgtttggcgcctatggcggtgctaaacacggtcagattgtggtggcc
gaaattacccagcagccggataaaaaccgcctgcctaccggccgcgtagtgcaagtgctg
ggcgatcatatggcgccgggcatggaaatcgagctggcgattcaagctcatggtatcccc
agtgtgtggccggaggcggtgattgccgaagcggcgcgtctgtcccatgaagtggaagaa
aaagacaaattgcaccgggtggatgtgcgccatttgccctttgtgactatcgatggtgaa
gatgcccgcgattttgacgatgccgtgttgtgcgagcggcgcaaaggtggttggcggtta
tatgtggcgattgccgatgtatcccactatgtgcaagtggagagtgcgctggatgtagag
gcgcgtgcacgcggcaactcggtgtatttccccgattacgtagtgcccatgttgcccgag
gccttatccaatggcctgtgttcgctcaacccgaatgtggatcgcttgtgcatgatctgc
gagatgaatatcagcacggcggggcgtattaccggttatcaattttatgaaggggttatg
cactcccatgcgcgcctcacttacaccaaagtgggcgagattctcaccggcgaaggtgaa
acccgcgcggcgctgcgcgaagaatataaagcggttattccgcagctcgaattgttgcat
aaactgtatgagtgtttgcgtgcagcgcgcgatgaacgtggtgctatcgattttgagacc
actgaaacacgcatccaatttaatgatgagcgcaaaattgaacgtattgttcccatcaaa
cgcaacgacgcccacaagttaattgaagaatgtatgttgtgcgccaatgtgtgtgcagct
acctttattgaaaaacataatttggtgggtttgttccgcgtacatgaaggcccgacggaa
accaagctcgccaacctgcgcgcttatttatcggagttgggtttaggtttggccggtggc
gataagcccacaccgggggattaccaacaattgctgcaaatgattcaggatcgcagcgac
ggccatttaatccaaacagtaatgctgcgcagtttgcgtcaggcgatgtatcaggtagaa
aaccacggccactttggtttgggttacgaagcttatacccacttcacctcgcctattcgt
cgctacccggatttgttagtgcatcgcgcgattcgctcggtaattcgcagcaccgaaccc
accacccatgtacgtcgggtggacaccgccaaagccattccgaagaaatttatttacccc
tatacggctgcagaaatgttggtattcggcgaacagtgttcacgcactgaacgccgcgcc
gatgaggcgacccgcgatgtggtgagctggctcaaatgtgaatacctgcgcgatcaagtt
ggcgccatttatgatggccatgtaagtgcagtaaccagctttggtttatttgttgaactc
aatgaattgtatgtggaaggtttgattcatatcacctcattgccacacgattattatcgt
tttgaaccggcgcaacatcgcttgatgggtgagcgcacgcgtaaagtatttggtttgggt
gatagtttggtggtgcgcgtagtgcgcgtggatttggacaaccgaaaaattgattttgag
ttggagtcggaggctgccattcgtcgccctaaatcccaagtcaaacctaaagtcgctaaa
cgcgatgcaaaaaatgcggctaaaaaatccgctgccaataagcaagatgttaaacaggtt
gtggccaaaccggctatcgcaacagctgtgccggaaaaagccgcgacgaaaaaaccagct
acaaaaaacactgccacaaaaaagaccactgcaaaaaaaccagcagttaaaaagccggcg
tcagttaagcctgcaagcaccaagcctgagggcagcaaatctggtggcgctaaggcggca
gtggctaaagtgaccggcaaaaaattagctgcaactgatgttgcagcagcgaaacccgcg
gtaaaaaaatccaatagtaaggtctctgtggctaaagcggagagtgccggtgctgccaag
aaaactgcagcaccgaaaaccgcagctgttaaaaaggtagctgctgcagtgcccgccaaa
aaaaccactaaggctgcaagtgaggtgagtcatggccgtaaaaatgcgaaagctacaagc
aaggcagcgccagcaacagttcaaccgtcgccgtcaggagcgacaaaaggcaaggctgtc
gctcgggctgcggcgccaactgctaaaaagccggtggctaaggctaagacaacgaagtga
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