Caenorhabditis elegans (nematode): CELE_B0240.4
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Entry
CELE_B0240.4 CDS
T00019
Symbol
npp-22
Name
(RefSeq) Nucleoporin ndc-1
KO
K14315
nucleoporin NDC1
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CELE_B0240.4 (npp-22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_B0240.4 (npp-22)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CELE_B0240.4 (npp-22)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
179607
NCBI-ProteinID:
NP_505962
WormBase:
WBGene00007118
Ensembl:
WBGene00007118
UniProt:
Q8I4N3
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Position
V:complement(11731120..11733472)
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AA seq
588 aa
AA seq
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MMGDSHSSFTTTTDEHLYNQFSPGRRKNDFPAASSSSSSPNLRRSPNRTVSSPRVQQKPI
TIFDQIVDWFQAEISVRKRLAGAACGYLSTIFFIVTVSILKLTIWAPFSSVQDSLAWWIY
PNAWASIIFVGIASVAMSLFSIIKFCKVDQLPRLAATDTFALAGVALEFVTRLTFVYTAF
CVADFSFSREFAFVAISLAIAISSALVVFRSDYQLNFSHIQVNSVKTLIDFGTSLPYANI
SEICGIDAAISYTAAVALILVVGPMVSGFSAWWLLLNIPFHVVLFGLCFTQQFYSKISMK
IVNQIVMKPISFPFPPPYTVHSPTPEQTRTLPNVIETDDSLLKFFALHDLRTIAWNDEKR
RVDVFSLSQPGKHPRNWKAVSLPCVRMLDELCSRMTVSAARLVGYSWDDHDIENEDVPRD
ALLMPRKMREMAYRGTGQSRQQKSMAPIRSHNTQTVGLLSKISNFLGFGVTEKLVISRFD
AHMNAYAAEALYMLVVDSMGEDRFGVVQKDLKDLITLLCKLIAAIDTYERAKASVADKSD
VTFLRIVDASLKSSLQRVVTTFGSHLSSLNLPEEHSRTIRMICLTDEL
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgatgggtgatagtcattcttcattcacaacaacgacagatgaacatctatataatcaa
ttttctccgggaagaagaaagaacgattttcccgctgcaagcagttcatcatcttcacca
aacttgcgaaggtccccaaaccgcacagtcagttcaccgcgtgttcaacagaagccaatc
acaattttcgatcaaatcgtggattggtttcaagcggaaatcagtgttagaaagagatta
gctggtgctgcatgcggatatctgtccaccattttcttcattgtcacagtatccattttg
aaactcacgatttgggcccctttcagctcagttcaagactccctggcgtggtggatttat
ccaaacgcatgggcctcaatcattttcgttggtattgcttctgtagccatgtctcttttc
agcattatcaaattttgcaaagttgatcaacttccacgattggcagctactgatacgttc
gctttagctggagttgcactcgaatttgttacccgcctcacatttgtctacacagccttc
tgtgttgcggatttctcattttccagagaattcgcctttgttgctatttcgctcgccata
gcaatttcatcagcgctagtcgttttccgttcggattatcaactcaatttttcgcatatc
caagtgaattctgttaaaactctcatcgattttggaacgtctcttccatatgcaaatatt
tctgagatctgtggaattgatgcggctatctcatacaccgcagccgtagctttgattctt
gttgttggacccatggtttctggattctcagcatggtggcttctattgaatatcccattc
catgttgtattgttcggactatgcttcacgcaacagttttattcaaaaatatccatgaag
atagtgaatcagattgttatgaagcccatcagcttcccgttcccgcctccatatacagtt
cactcaccaactcctgaacagacaagaactcttccaaatgtcatcgaaactgatgattca
cttctgaaattctttgctcttcatgatcttcgaacaattgcgtggaatgatgagaagcga
cgggtggatgttttctctctatcgcaacctggaaaacatcctcgtaactggaaagctgtt
tccttgccttgtgtaagaatgcttgatgaactttgttcaaggatgactgtttcggctgct
cgtctcgtcggatattcttgggatgatcacgatattgaaaatgaagatgtcccacgagat
gctctcctgatgccaagaaaaatgcgtgaaatggcttatcgtggcacaggacaaagccgt
caacagaaaagcatggctcctattcgatctcacaacacacaaactgttggacttcttagc
aaaatctctaacttcctagggtttggagtcactgaaaaactagtgatttctcgttttgat
gctcatatgaacgcctacgccgctgaggctttatacatgcttgttgttgattctatggga
gaagacagattcggagttgttcagaaagacttgaaagatctcatcacgctgctctgtaaa
ctcattgcagccattgacacatatgaaagagctaaagcgtcagtagctgacaaatcagat
gtgacattcctgcgtatcgttgacgcatcgctcaaatcaagtcttcagagggttgttacc
acattcggaagccatttgagttcactcaatctcccagaggaacactcacgaaccattcgg
atgatttgtctcacagatgaattgtaa
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