KEGG   Caenorhabditis elegans (nematode): CELE_C01F6.5
Entry
CELE_C01F6.5      CDS       T00019                                 
Symbol
aly-1
Name
(RefSeq) Chromatin target of PRMT1 protein C-terminal domain-containing protein
  KO
K12881  THO complex subunit 4
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03013  Nucleocytoplasmic transport
cel03015  mRNA surveillance pathway
cel03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CELE_C01F6.5 (aly-1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    CELE_C01F6.5 (aly-1)
   03015 mRNA surveillance pathway
    CELE_C01F6.5 (aly-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_C01F6.5 (aly-1)
   03041 Spliceosome [BR:cel03041]
    CELE_C01F6.5 (aly-1)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CELE_C01F6.5 (aly-1)
    TREX complex
     CELE_C01F6.5 (aly-1)
Spliceosome [BR:cel03041]
 Complex C
  Other components
   EJC/TREX
    CELE_C01F6.5 (aly-1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CELE_C01F6.5 (aly-1)
SSDB
Motif
Pfam: FoP_duplication RRM_1 DUF1122
Other DBs
NCBI-GeneID: 177735
NCBI-ProteinID: NP_501588
WormBase: WBGene00000120
Ensembl: WBGene00000120
UniProt: Q17561
LinkDB
Position
IV:9108931..9109753
AA seq 223 aa
MARAIAIDAPLSAGIRRTKKSPIKRASVGGVKKRFSTGTAGPSRRPTAQPRRQSGGIRTV
DRSIPANENREVRINLSNLAHTVHSGDLRQLFAEFKIRNVSVNFNEHGKPVGTGDVTLPK
RHADRLIQKFAGVSLDGKEIKFAIIDSANIANRVKFPEAPRRAPSNGRPAQRAPKRQNVK
SGKPTGGAGAQKKLKAKKPKREAQPKKTLEELDAELDVYMSKA
NT seq 672 nt   +upstreamnt  +downstreamnt
atggctcgtgctattgctatcgatgctccactttccgctggaatcagaagaacaaagaaa
agtccaatcaaaagagcatcagttggtggagttaaaaagagattctccactggaactgct
ggaccatcaagaagaccaactgcgcaaccaagacgccaaagtggaggaatcagaacagtt
gacagatctattccagcaaatgaaaaccgtgaagtacgtatcaacttgtcaaacttggcc
cacaccgttcactccggggaccttcgtcaactcttcgctgaattcaaaattcgaaacgtc
tccgtgaacttcaacgagcacggaaaaccagtaggaaccggagatgtgactctcccaaaa
cgtcacgctgatcgtctcatccaaaagtttgccggagtctcactcgacggaaaggagatc
aaattcgctatcattgattcagcaaatattgcaaaccgtgtcaagttcccagaagctcca
agaagagctccatcaaatggaagaccagctcaaagagcaccaaaaaggcagaatgttaaa
tcaggaaaaccaacaggaggggctggagctcaaaagaaattgaaggccaagaagccaaag
agagaagctcaaccaaagaagacactcgaagagttggatgcggagctcgatgtgtatatg
tcaaaagcctaa

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