Caenorhabditis elegans (nematode): CELE_C16A3.3
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Entry
CELE_C16A3.3 CDS
T00019
Symbol
let-716
Name
(RefSeq) S1 motif domain-containing protein
KO
K14792
rRNA biogenesis protein RRP5
Organism
cel
Caenorhabditis elegans (nematode)
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cel03009
]
CELE_C16A3.3 (let-716)
Ribosome biogenesis [BR:
cel03009
]
Eukaryotic type
90S particles
Other 90S particles
CELE_C16A3.3 (let-716)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
S1_RRP5
TPR_14
TPR_19
TPR_16
TPR_CcmH_CycH
DUF7017
HAT_Syf1_M
ARM_TT21
ChAPs
Nop14
CDC45
Motif
Other DBs
NCBI-GeneID:
175906
NCBI-ProteinID:
NP_498398
WormBase:
WBGene00002850
Ensembl:
WBGene00002850
UniProt:
Q18038
LinkDB
All DBs
Position
III:<6383552..6389410
Genome browser
AA seq
1743 aa
AA seq
DB search
MVKLDEVTNEKCFPRGGGSDKPKPLNKSNSDFVGTKGGLKRKSAAPEQHEAKKAKEESSW
IPKVEENCFIEGLTGFGVVSEVFDDGVLLHTAGTHTVKIHASEVSKKFTELFNEEKIEIK
NAFQLGQMVPFRVISKKQGNDKGKVKGTCNPARLNKHLSPNMLAAGLVLHTAVVSIEEKG
AILDVGLDQITGFIEKSQFPAAGLKEGMPLIVRVLSSTSRVVKVTSFVEQDNLNMTSCEK
LQLNHLMPGTILECEPTGDAVTAGVIVNIGNGLKGILPRRNLPPRLRENPEKLGKAIRAI
VMFCQQNSKILVLNAHPDIVAASRIEKRTSFEGISIGDKVKCTVIDVLPTKSMVYFALPA
IDGKKSLVTAVSSRGLLEKPDQVSTEYEVGTEKLCRVTGFRYADRSITISTRKDILNQKI
TKYQDAKCGDVLDARVHHVAKSGVYFMVCNFVKAFAPLSMLSDKPLPAQKMKNIYKVGTE
VKCRVWQICDERKNLIVTCRESILGLKSPSVNSVQELEIGVTVPCVIRKVFPTGVLLLGT
FNNICGVLRKESAVHLPGTPKNNDFVVANVEKIEDNRVVFVLRDVNPSAAVANGQNSEKK
LVQRPNPADGGISIGKIYKGSLCAKAGEKANVTFTGEGKKEVYASVDDHLLSDLLDAPIG
LTKRLLIENKEDISTIVPMGKMAAINRACVKRSVASFVKGMKLPKKIDELKVGKVIVGIV
GQVITNVGVFVELVGGSGLVGKVLERKNAKNTSELLEVGQVIVGTIESIDTTKKSFLIDP
CTDLETGELMLKKYALPLLESIVEEVKWLAEQSNYPIPGSKVNGKVTKELDDLTLVEFEH
NGKKIAGILPKMVDDKKTTEKTKKKKATKSFIVVDINHSTNEVVLATPSTEQSRIVAIRR
DYLCAVSPDGLIYLPTRLHPNHLPTSDSKVKLHTVIDLNDQKSVGEGVFVATRGGGDVDD
VARTTLINKEFVGDEKKKKQTAEGSDGAVSTSTKSVKNFGVYSGVVIGTANLEENRKRNS
LFADIRLPGDNIGRLHVSELPPSLLKAENPLDEFVKRNVRKAVIVRIIGFIKSSKGPRIA
ELTMIPSKIQAGKVRASNLSYKSNYKIGDVVKCFGANTMTEKQELKVEVNPVWTGTISRE
NLSDDLKVTAADGGIVDLALKKGEMREAKITAVDRKNMSLKLTLDTAEEAFEIGASVTGR
VFFVSKTYIRLKLSSGQQAVLTPTAITDKYETIEKITENQLTDGKLVDVVCAKLQEKPRR
YFVVLKNRFNSKSTDAKRQLLLDSKLMKEGDQYDGIVENASKGSLFIELGPGVSGRIPVN
EENQDLLEIGTNSVIRVTVVKVAKNEITLKLDDILIRKWTVKPDRKRTSSKSEGVPSKVA
LLEEERSKETVEAEDPGFDWSNKGFRNEDLAAVGKLTLKDAEEESEEEEEEDEEEVEDEE
VDEDASDEEEEVDGEEDESDDEENIELIEKSEEDHSRLVRSDPNSAINWIEYMSHFIEKS
DLAAARKTAEEALGAINPTESDELLKIWTAYLNMEVAYGDAATVQKVFERACKNANAYTV
HKTLSKIYQKFEKNAEATQILEQMVKKFRANQLEVWTLLAEHLMTQNDQKAARELLPRAL
KSAPKAQQHVQLISKFAQLEFKHGDAERGRTLLEGLVTAHPKKTDLWLVYAEAVLKHLGI
EHARKVLERACNLGFSIHKMRPLYKKWLEMESKHGDAAAVELVKAKAEKFLQAVADNVLE
EDN
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atggttaaactagatgaggtaacaaacgaaaagtgcttcccgcgtggtggtggttcggac
aagccaaaaccattgaacaaatccaactcggactttgtaggaacgaaaggagggctaaag
agaaagtccgcagccccagaacaacacgaggccaagaaagctaaagaagaatctagctgg
attccgaaggttgaggagaactgcttcattgaaggactcacaggttttggggtagtttct
gaggttttcgatgatggagttcttctgcataccgctggtacacataccgtcaagattcat
gcttcagaagtctcgaagaagtttacggaacttttcaacgaggaaaaaattgagattaag
aatgcatttcaactcggccagatggttccatttcgtgtgattagtaagaagcaaggtaac
gacaaagggaaggtgaaaggaacttgcaacccagctcggctcaacaaacatctctctcca
aatatgttggctgccggtctcgttcttcataccgccgtcgtcagtattgaggagaagggt
gctattctggatgttggacttgatcaaataacaggattcatcgagaaatcgcaatttcca
gcagcaggattgaaagaaggaatgccacttattgttcgagttctatcttccacgtcaaga
gtagtaaaagtaacttcctttgtggagcaggacaatttgaatatgacgtcttgtgagaag
ctccaactgaaccatttgatgcctggaacaattctcgaatgtgagccaacaggagacgca
gttactgctggagtcattgtaaacattggaaatggcctgaaaggaattctccctcgccga
aatttgcctccgcgccttcgtgagaatccggagaagctcgggaaagccattagagcaatt
gtgatgttctgtcaacaaaattcaaaaatccttgtactcaatgcacacccagatattgtt
gctgccagtcgtatcgaaaaaagaacatcgtttgaaggaatttcaattggagacaaagtc
aagtgcactgtaattgatgtactcccaaccaaaagtatggtgtactttgctctccctgct
atcgatggaaaaaagtcattggtcactgcggtgtcatctcgaggacttttggaaaaacca
gatcaagtttctactgagtatgaagttggaacggaaaagctgtgtcgagtcacaggattt
cgatatgcagaccgatcgatcaccatttcaacgagaaaagatattttgaatcaaaaaatt
acaaaatatcaggatgcaaagtgtggagatgtacttgatgctcgtgttcatcacgtggca
aaaagtggagtttacttcatggtgtgtaattttgtaaaagcatttgctcctttgagcatg
ctttcggataagccacttcctgcgcaaaaaatgaagaacatctataaagttggaactgaa
gtaaaatgtcgtgtatggcagatttgcgacgagagaaaaaatttaatcgtcacatgtcga
gagtctattcttggattgaaaagtccgtccgtcaacagtgttcaagagttggagattgga
gttactgttccatgcgttatcagaaaggttttcccaacgggagttcttcttctcggaaca
ttcaataacatttgtggagttcttagaaaggaatccgccgttcatttgccaggaacaccg
aagaacaacgattttgtagttgctaatgtggagaagatcgaggacaaccgagttgtattt
gtgcttcgtgacgttaacccgagtgctgctgttgcaaatggacaaaattccgagaagaaa
ctggttcagagaccgaacccagctgatggaggtatatcaattggaaagatctacaaagga
tcattgtgtgccaaggcaggagagaaagcaaatgtcactttcaccggtgaaggaaagaaa
gaagtttatgcttctgtagatgatcatcttctatccgatcttcttgatgctccaattgga
ctaacaaagagattgttgattgagaataaggaagatatttcaactattgtgccaatgggt
aaaatggcagctatcaaccgagcctgtgtgaaaagatctgttgctagttttgtaaaagga
atgaagctaccaaagaagattgatgagctgaaagtaggaaaagttattgtcggaatcgtt
gggcaagtcatcacgaatgttggagtatttgtggagctcgttggaggaagtggacttgtt
ggaaaggttctggaaagaaagaatgccaagaacaccagcgaacttctcgaagttggacaa
gtcattgtgggaacaattgagagcattgatacaacgaaaaagagttttcttattgatcca
tgtactgatctagaaactggcgagctgatgcttaagaaatatgctcttccacttttggaa
tcaattgttgaagaagtgaaatggctcgccgagcagtccaactatccaattcctggttcc
aaagtcaatggtaaagtcaccaaagaattagatgatctgacgctagtggaattcgagcac
aatggaaagaagattgctggtattttaccaaagatggttgatgataagaagacaactgag
aaaaccaagaagaagaaagcaacaaaatcatttatcgtagtcgatatcaaccattccact
aatgaagtcgttctggccactccatctactgaacaatcaagaatcgttgcaatacgtcgt
gattacttgtgcgcagtttcaccagacggtctgatttatttaccaacaagacttcatcca
aatcatcttccaacttctgattcaaaagttaaacttcatactgttatcgatctcaatgat
cagaagtcagttggagaaggagttttcgtggctacacgtggtggtggagatgtggacgat
gtagcaagaacaacattgatcaataaagagtttgtgggagacgaaaagaaaaagaagcag
acagctgaaggatctgatggcgcagtgtcaaccagcacaaaaagcgtcaaaaatttcgga
gtctacagtggtgtagttattggaaccgccaatctagaagagaatcgaaaaagaaactca
ttgtttgctgatattcgtcttcctggggataatattggacgacttcatgtctctgaactt
cctccaagtcttctgaaagctgagaatccacttgatgaatttgttaaaaggaacgtgcga
aaagctgttatcgtccgtattattggatttatcaagagttctaagggaccaagaatcgca
gaattgactatgatcccatcaaaaattcaagctggaaaggttcgtgcatccaatctctcg
tataaatccaactacaaaatcggagacgtcgtcaaatgtttcggggctaacacaatgact
gaaaaacaggaattaaaagttgaagtcaatccagtttggactggaaccatctctcgtgag
aatctgtctgatgatctgaaagtaactgctgctgatggaggaatcgttgacttggctctc
aaaaaaggagaaatgcgcgaagcaaagatcacggctgttgacagaaagaatatgtcatta
aagttgactcttgatactgctgaagaagcattcgaaattggagcatctgtaacaggacgt
gtcttctttgttagtaaaacctacatccgattgaagctttcatctggacaacaagctgtt
ctaacaccaactgctatcacggataaatatgaaaccattgagaaaatcacagagaaccag
ttgacagatggaaaacttgttgatgttgtctgcgcaaaattacaagaaaaaccacgaaga
tatttcgttgtgctcaaaaatcggtttaactctaaatctacggatgcaaaaagacaattg
ttattagatagcaaactcatgaaggaaggtgatcagtatgatggaatcgttgaaaacgcc
tcgaaaggatcgttattcattgaacttggacctggagtttccggacgaatcccagtgaat
gaggagaatcaagatctattggaaatcggaacgaacagtgttatccgtgtgaccgtcgtt
aaagttgcaaagaatgaaatcacattgaagctcgacgacattctcattagaaaatggaca
gtgaagccggatagaaaacggacgtcatcaaaaagtgaaggagttccatccaaagtcgcc
ttattggaagaggaaagatcaaaggagactgttgaagctgaagatcctggatttgattgg
tcgaataaggggtttagaaatgaagacttggctgctgttggaaaattgacattgaaggat
gctgaagaagagagtgaggaagaagaagaagaggacgaagaagaagtcgaggatgaagaa
gtcgatgaggatgcttcggatgaagaagaagaagtagatggtgaagaagatgagtcggat
gatgaagagaatatagaactaattgaaaaatcagaagaagatcattcaaggcttgtacgc
agtgatccaaactctgcaatcaattggatcgaatacatgagtcactttattgaaaaatcc
gacttggcggctgccagaaaaactgcagaagaagctcttggagctatcaatccaactgaa
tctgatgaactcctgaagatttggactgcgtatctcaacatggaggttgcctacggagat
gccgctactgttcaaaaagttttcgagcgtgcctgcaaaaacgccaacgcttacactgtt
cataagaccctttcaaaaatctatcaaaagttcgaaaaaaatgccgaagctactcagatc
ttggagcagatggttaagaagttccgtgcaaatcagctcgaagtttggactctgctcgcc
gagcacttgatgacacaaaacgaccaaaaagcggcgagggagcttctccccagggcattg
aaaagtgcgccaaaggcccaacagcacgtccaactcatttcaaagtttgcccaactcgaa
ttcaagcacggtgatgctgaacgtggaagaactcttctcgaaggacttgtcactgctcat
ccaaagaaaaccgatctttggttggtgtacgctgaagctgttctgaaacatcttggaatt
gaacatgcacgaaaagttcttgaaagagcctgcaatcttggattctcgatccataaaatg
agacctttatacaagaaatggttggagatggagagcaagcatggtgatgctgccgcagtt
gagcttgtaaaagcaaaagctgaaaagttcctgcaagctgttgctgataatgtattagaa
gaggataactag
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