Caenorhabditis elegans (nematode): CELE_C26E6.4
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Entry
CELE_C26E6.4 CDS
T00019
Symbol
rpb-2
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03020
RNA polymerase
cel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CELE_C26E6.4 (rpb-2)
09124 Replication and repair
03420 Nucleotide excision repair
CELE_C26E6.4 (rpb-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cel03021
]
CELE_C26E6.4 (rpb-2)
03400 DNA repair and recombination proteins [BR:
cel03400
]
CELE_C26E6.4 (rpb-2)
Enzymes [BR:
cel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CELE_C26E6.4 (rpb-2)
Transcription machinery [BR:
cel03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CELE_C26E6.4 (rpb-2)
DNA repair and recombination proteins [BR:
cel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CELE_C26E6.4 (rpb-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
DUF5816
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-GeneID:
175668
NCBI-ProteinID:
NP_498047
WormBase:
WBGene00016140
Ensembl:
WBGene00016140
UniProt:
Q10578
LinkDB
All DBs
Position
III:4939567..4944404
Genome browser
AA seq
1194 aa
AA seq
DB search
MMYDDEDEMVNDPMDGDYIDDSDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQ
MNVQRIVEDSPPVELQSENQHLGTDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNE
ARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTE
LNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTECRSCLENSSRPTS
TMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFN
DPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGV
SEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLK
EMRMTAQKYINKNDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRL
TYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYIS
VGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQ
MDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKY
TWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELP
AGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPT
REKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDAS
TFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQED
MPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISG
LLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQ
PMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTN
SFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVKPRQSKRSKHQSEA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacgatgatgaggatgagatggttaatgacccgatggacggagactatatcgat
gattcggatgaaatcagtgcagaagcatggcaagaagcatgttgggttgttatcagtgct
tatttcgatgaaaagggtctcgttcgtcaacaacttgattccttcgatgaattcgtccaa
atgaatgtgcagcgaattgttgaggattctccgccagtcgaacttcaatcagaaaatcag
catcttggcacagatatggaaaatcctgcgaaattctcattgaaattcaatcaaatttac
ctctcgaaaccaactcactgggagaaagacggagcaccaatgccaatgatgcctaacgaa
gctcgtctccgaaatttgacatacgcctcgccactttacgtagatatcactaaagtggtg
acaagagacgattcagcaacggaaaaagtgtacgacaaagtgttcgttggaaaagttcca
gttatgctacggtctagttactgtatgctttccaatatgacagatcgtgatctaacagaa
ctcaatgagtgcccacttgatcctggaggttattttgttatcaatggttcggagaaagta
cttattgctcaagaaaagatggcgactaatacagtttacgtgttctcaatgaaagacgga
aaatatgcattcaaaacggaatgtcgctcttgtttggaaaattcatctcgtccgacatcc
acaatgtgggttaatatgcttgcaagaggaggaggtggtggaaagaagacggcgatgggt
caacgaattattggaattttaccatatattaaacaagaaattccgattatgattgtgttc
cgagcgctgggattcgtatcagatcgtgatattcttggacacattatctacgatttcaat
gatccagaaatgatggaaatggtcaaaccttcgttagatgaagcttttgtcattcaggag
caaaatgttgctctcaactttatcggagctcgtggagcaaaaccaggagtaaccagagaa
caaagaatcaaatatgctcgtgagattcttcaaaaagaacttttgcctcatgttggtgta
tctgagcattgcgaaacgaaaaaagcattcttcatcggatacatggtgcatcgtcttctt
ctagccgccctcggacgtcgtgaacttgatgatcgtgatcacattggaaacaaaagactg
gatttagccggaccacttcttgctttcttgttccgttcccttttcagaaatcttctcaag
gagatgagaatgacagctcaaaagtatatcaacaagaatgacgactttgctcttgatgtc
tgcgtcaaaacttcaacaataactcgtggattgacatattcattggctaccggtaattgg
ggtgatcaaaagaaagcacatcaatcgagagccggtgtgtctcaagtactcaatcgtctc
acctacacggccacactttcacatttgcgtcgagcgaactctcctattggacgagaagga
aaacttgccaagcctcgtcagctgcataatactcaatggggaatggtgtgtcctgctgaa
actcctgaaggacaggctgtaggtttggtgaagaatctggcacttatggcatacatctct
gtcggttcgttaccagagccaattctggaattcttggaagaatggtcaatggaaaatctt
gaagaagtgtctccatcggctattgccgatgctacgaagatctttgtcaacggtgcatgg
gtgggaattcatcgtgaacccgatcaattgatgacgacgttgaagaagcttcgacgtcaa
atggacatcatcgtttccgaagtatcaatggttcgtgatattcgtgacagagaaattcgt
atctacactgatgctggaagagtttgccgtccattacttattgttgagaatcagaaattg
gcattgaagaagagacacattgatcagttgaaggaggctgctgacgaagcgaataaatac
acatggtctgatcttgttggtggtggagttgtcgaactgattgattcaatggaagaagaa
acatcaatgattgcaatgatgccagaagatttgagaagtggtggttactgtgacactcat
actcattgtgaaattcatccagccatgattctcggagtttgtgcctcaatcattccattc
ccagatcataatcaatcaccacgtaatacataccaaagtgctatgggtaagcaagctatg
ggagtttatacaacaaatttccatgttcgaatggacactcttgcacacgttctctactat
ccacaaaaaccgcttgtcactacaagatctatggaatatcttcgattcaatgaacttcca
gccggaatcaacgcaattgttgctattctttcatattccggatataatcaggaagattct
gtcattatgaacaactctgcaattgatcgaggacttttccgttctgttttctatcgttct
tatcgtgacaatgaggcaaatcttgacaatgcaaatgaagaactgattgagaaaccaact
cgtgaaaaatgttctggaatgcgtcattcattgtacgataagcttgatgaagacggaatc
atctctccaggaatgcgtgtgtctggcgatgacgtcattattggaaaaacagttgctctg
ccagatattgatgatgatttggatgcatctgggaagaaatatccaaagagagatgcatcg
acattcttgagaagttctgaaactggtattgtggatcaggtgatgctctccctcaacagc
gatggaaataaatttgtcaagattcgtatgcgttctgttcgtcttccacaaattggagat
aaattcgcatctcgacacggtcaaaaaggaaccatgggtattatgtatcggcaagaagat
atgccatttactgctgaaggactcactcctgatatcatcattaatcctcatgccgttcca
tctcgtatgacaattggtcacttgatcgaatgccttcagggtaaactatcagcaaacaag
ggagaaatcggagatgctacaccattcaacgatacagtcaacgtacaaaagatctctggc
ctactatgtgagtatggttatcatttgcgtggtaacgaagtgatgtacaacggacatact
ggaaaaaagttgacaactcaaatcttctttggaccaacttattatcaacgtctcaagcat
atggtcgatgacaagattcactcacgtgcacgcggtccaattcagatgatgaatcgacag
cctatggaaggaagagctcgtgacggaggtctccgtttcggagaaatggaacgagattgt
caaatttcccacggagctactcaatttttgcgagaacgtctttttgaggtgtcagatcca
tatcatgtgtacgtgtgcaacaactgtggtcttattgtcgtcgccaacttgagaacgaac
agtttcgagtgcaaggcttgtcgcaacaagacccaagtatccgctgttcgtattccatac
gcttgtaagctgctcttccaggagttaatgtcaatgtctattgctccaagactcatggtc
aagcctcgacaatcaaaacgttcaaaacatcaatcggaagcctaa
DBGET
integrated database retrieval system
