KEGG   Caenorhabditis elegans (nematode): CELE_C33H5.7
Entry
CELE_C33H5.7      CDS       T00019                                 
Symbol
swd-2.2
Name
(RefSeq) WD_REPEATS_REGION domain-containing protein
  KO
K14962  COMPASS component SWD2
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CELE_C33H5.7 (swd-2.2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_C33H5.7 (swd-2.2)
   03036 Chromosome and associated proteins [BR:cel03036]
    CELE_C33H5.7 (swd-2.2)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     CELE_C33H5.7 (swd-2.2)
Chromosome and associated proteins [BR:cel03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     CELE_C33H5.7 (swd-2.2)
    COMPASS/SET1 complex (yeast)
     CELE_C33H5.7 (swd-2.2)
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40 EIF3I WDR55 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_RFWD3 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_EIPR1 PQQ Beta-prop_SPT8 Beta-prop_Nup120_160 PEP5_VPS11_N Beta-prop_DCAF4 Beta-prop_EML Frtz PQQ_3 WD40_MABP1-WDR62_1st Beta-prop_NUP159_NUP214 Beta-prop_VPS8 DUF7165
Other DBs
NCBI-GeneID: 177561
NCBI-ProteinID: NP_501280
WormBase: WBGene00016374
Ensembl: WBGene00016374
UniProt: Q18403
LinkDB
Position
IV:7774411..7776038
AA seq 326 aa
MTMKEVEITAESLAKLTPAKQPNDTTTRVNSLSYGLKGDHMIMSTDDDSMFLYDMNTGLR
SRSVNSKKYGCSHVKFASDSMCALHGSTKVDNTIRYLSLTDNKYIRYFQGHDKLVTGINV
SPMDDMFLSVAEDKTIRLWDLKTHNCIGLMNLSATPIATFDPEGLLFAAGLDNNIIKLYD
LRSFDKGPFSSFGPLENEDNVEWTAMRFSPCGKYIMICTNSSQLLLVDAFTGLIKFTLEE
HQNAQKIPLMASFTPESSHIMVGSSDGYIYFYDVETGEIALKTLAPNNQTCHIAEFSPQH
FVAATADTKLTLWCASDELKAQAQQS
NT seq 981 nt   +upstreamnt  +downstreamnt
atgactatgaaagaagtggaaataacagctgaatctctagctaaattgactccagcgaag
caaccaaatgacacaacaacaagagtcaatagtctttcatatggcttaaaaggagatcac
atgattatgtcgacagatgatgattctatgtttctgtacgatatgaacaccggcttacgc
tctcgcagtgttaacagtaaaaagtatggatgctcacatgtgaagttcgcatcagattcg
atgtgcgctcttcacggttcaacaaaagttgacaacactatcagatatctatcactcacc
gacaataaatatatccgctattttcaaggccatgacaagctcgttactggaataaacgtt
tcaccaatggacgatatgtttctctcagttgccgaagacaaaaccattcgactttgggat
ctgaaaactcataattgcattggattaatgaatctttcggcaactcctatagcaacattt
gatccagaaggacttctttttgcagcagggcttgacaataacattatcaaactttatgat
ttacgatctttcgacaaaggtccattttctagttttggtcctttggaaaacgaagacaac
gtggaatggactgcaatgcgattctcgccatgtggaaaatatataatgatttgtacaaat
tcatcacagttattacttgtggatgcattcacgggacttataaagttcacactggaggag
catcaaaacgcacaaaaaattccactgatggcctcattcacacctgaatcttctcatatt
atggtgggaagctccgatggttacatctacttctatgacgtcgaaactggagaaattgct
ctgaaaacattagctccaaacaatcagacatgccatattgctgaattcagcccacagcat
ttcgttgctgcaaccgctgatacaaaattaactctctggtgtgcctccgatgaactaaaa
gcacaagcacaacaatcgtaa

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