Caenorhabditis elegans (nematode): CELE_C43E11.1
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Entry
CELE_C43E11.1 CDS
T00019
Symbol
acin-1
Name
(RefSeq) SAP domain-containing protein
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03013
Nucleocytoplasmic transport
cel03015
mRNA surveillance pathway
cel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CELE_C43E11.1 (acin-1)
09122 Translation
03013 Nucleocytoplasmic transport
CELE_C43E11.1 (acin-1)
03015 mRNA surveillance pathway
CELE_C43E11.1 (acin-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_C43E11.1 (acin-1)
03041 Spliceosome [BR:
cel03041
]
CELE_C43E11.1 (acin-1)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CELE_C43E11.1 (acin-1)
Spliceosome [BR:
cel03041
]
Complex C
Other components
EJC/TREX
CELE_C43E11.1 (acin-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
RRM_1
ThiI_fer
Motif
Other DBs
NCBI-GeneID:
172030
NCBI-ProteinID:
NP_491344
WormBase:
WBGene00016601
Ensembl:
WBGene00016601
UniProt:
P91156
LinkDB
All DBs
Position
I:4270666..4273336
Genome browser
AA seq
580 aa
AA seq
DB search
MADEDILVDGRPLSSLKVTELKEELENRQLSTKGVKAVLQERLREALAAQGDDPVVDEQN
PIVAGYLARQSAALAEARKRTESEASGTTTPQSEVSPSKQSEASPRKGRTPRKEKKDVEP
EAEPEPEADIAPEPEKVAIVEKPEPKPEPITETEASPSKASEKDAAVEVSVEKVDAETAQ
ESDSPQEAEKEKTEPQVELENGGQEEDEPDRDESIEKQPEKEDDGDELDYGDDEEKEQKD
DESMDAEDAKEEKVVQIEKEKKEDKDDGVKKEEKVREVSRRRVSSPSSRHPVSNVVHIRG
LTRPFTEGQLRAEIQKNCGEIVDLWMDKVKSHCFVKLNSDADAGNVISAMNNVVWPDGNP
KRLSIVYDTEDNLIKHRNGLEATIAEPAKIGGGRADRLSTTSQSSILGGKTNFQITMQNV
LRDNDKLDSERKRERGSIQSRLTRIENKDQVKDEKKDEKKEDRKRKRSETPPFSRGAGFM
DEKKARNEERERRREGPRSEERRKVVVEEEEAPKKSLDQLFKKTVALPPIYYLPLTEEQI
AAKEAEKSAKGKERAETTSDRDRPHRVDRNDRGDRPRHRD
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggatattttagtggacggacgtccgttgtcttcactcaaagtgacagaa
ctgaaagaagagctcgaaaaccgccaactatccacgaaaggggtgaaagctgtgctgcag
gaaaggcttagagaggctctcgcagcacaaggagacgatccggtggttgatgagcagaat
ccgatagttgctggatatttggcaaggcaatcggcggcactggcggaagctcggaagaga
acagaaagtgaagcatcgggaacgaccactccacagagtgaggtatcgccgtcgaagcaa
tcagaggcctcgccaaggaagggaagaactccacggaaagaaaagaaggatgtggaacca
gaagcggagcctgagcctgaagcagatatcgccccagagccagagaaagtagctattgtg
gagaaaccagaaccgaaaccagaacctatcacggaaacagaagcatctccatcaaaagct
tccgagaaagatgccgcagttgaggtatctgttgaaaaagtggatgctgagacagctcag
gaatccgattctccacaagaagcagaaaaagaaaagaccgagccgcaagtggagctggag
aatggtggtcaggaggaggacgagccagatcgcgatgaatcgatagagaagcaaccagag
aaggaggatgatggggacgagctcgattatggagatgatgaagaaaaggagcagaaggac
gacgaatcaatggatgcagaagatgcaaaggaagagaaggttgttcagatcgaaaaggaa
aagaaagaagacaaggatgatggtgtcaagaaggaggaaaaggtgcgcgaggtgtctcgc
cgtcgcgtatcttctccttcgtctaggcacccagtctcaaatgttgttcacattcgtggt
ttgacacgtccatttaccgaaggacaacttcgcgcagaaattcaaaagaactgcggtgaa
atcgttgatttgtggatggataaggttaaaagccattgcttcgttaagctaaattccgat
gcggacgctgggaatgttatcagtgcaatgaacaacgtcgtttggccagatggtaaccca
aagagattgtctattgtctacgatacagaagataatttgatcaagcataggaatggatta
gaggctactattgccgagccggctaaaatcggcggcggccgagctgatcggctctcgacc
acgtctcaaagttcgattcttggaggaaaaaccaacttccagattactatgcaaaatgta
cttcgcgacaacgataagcttgattcggagcgcaaaagggagcgtggaagtattcaatcg
agactcacacgcattgaaaacaaggatcaagtgaaggatgagaagaaagatgaaaagaaa
gaggatagaaagagaaaacgatcggagactcccccattttctcgtggtgctgggtttatg
gacgagaaaaaggctagaaatgaggagagggagcgaagacgagaaggcccgcgaagcgag
gaacgtcgaaaagttgttgtcgaagaagaagaggctccgaaaaagtcactcgatcagctc
ttcaagaaaactgtagctcttccgccgatttattatctgccattaacggaagagcagatt
gctgccaaggaggctgagaagagtgcaaaaggaaaggagagagctgaaacaacatcagat
cgtgatcgtccacatcgagttgacagaaatgatcgaggggatcgtccaagacatcgcgat
tga
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