Caenorhabditis elegans (nematode): CELE_C46F11.4
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Entry
CELE_C46F11.4 CDS
T00019
Symbol
C46F11.4
Name
(RefSeq) RNA helicase
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CELE_C46F11.4 (C46F11.4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cel03041
]
CELE_C46F11.4 (C46F11.4)
Enzymes [BR:
cel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CELE_C46F11.4 (C46F11.4)
Spliceosome [BR:
cel03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
CELE_C46F11.4 (C46F11.4)
Complex B
CELE_C46F11.4 (C46F11.4)
Complex C
U2 SnRNP specific factors
CELE_C46F11.4 (C46F11.4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
PRAI
Motif
Other DBs
NCBI-GeneID:
175469
NCBI-ProteinID:
NP_497743
WormBase:
WBGene00008119
Ensembl:
WBGene00008119
UniProt:
Q93382
LinkDB
All DBs
Position
III:complement(3657712..3664304)
Genome browser
AA seq
811 aa
AA seq
DB search
MWRGKYSGGYQNRFVSAKSSGTSSLSDGKSMNNVPPPAALTVGNAPVPPPNRNILLSNRK
EQEMKKEQEYANLMAYGSTSEKQSRRKRIYDDEYLEGGSDDEKPASSSSKLAADDDDEED
ELDAFMAGIEKQASSDKKVSEQKEKDRKEGKDTEDPSKKGLGRADIDEEDMQESLFKFME
EYKEKHENDDEQLEYDEDGNIIWSWKKVIDPLPDIDHSQIQYQKFNKNFYEEHEDIKRLH
YMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSAL
SGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKK
FCKVYNINPICAYGGGSKWEQSNELQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFD
EADRMFDMGFEAQVKSISDHVRPDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEA
NADIEQKVFVMQNQDVKLHWLIRNLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVL
LHGDMLQAERNENLLKFRKKSQILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGR
TGRAGHKGTAYTLVTEKDIEMVGHLVKNLESVSQEVPKPLMDLAMKSSWFRGQRAGNGGP
STGTQTRGRMGLGYTPKVRQVGGGATGAQFDPLKEQKSCRGGGNQTVDGMIRNAQSFATS
SSSSSSSSSGPASGANRAQMLKSAFQKSFQTTFQRPTNESSNLPQQVASDPRPEWKKKVD
ELNAKIAQQQASSASGGSSSSSSSSKRSRWE
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgtggaaaatattcaggaggatatcaaaatcgatttgtaagcgcaaagagttcg
ggaacctccagtttgagtgatggtaaaagtatgaataatgtacctcctcctgcagcttta
acagtcggaaatgcgcctgttccaccaccaaatcggaatattctcttgtcaaatcgaaaa
gagcaagaaatgaagaaggaacaagagtacgcaaatcttatggcttatggctcgacgtct
gagaaacaatcaagaaggaaacggatttatgatgatgaatatttagaaggcggctcagat
gatgaaaagcccgcttcttcctcctcaaaacttgccgccgatgacgatgatgaagaagat
gagctcgacgcatttatggccggaatcgaaaagcaggcttccagtgataaaaaagtttcg
gagcaaaaagagaaagatcggaaagagggaaaagatacggaggatccgagtaaaaaaggg
cttggaagagcagatattgatgaggaggatatgcaggaatctctattcaaattcatggaa
gagtacaaagagaaacacgaaaatgatgatgagcaattggaatatgatgaagatggaaat
attatttggtcatggaaaaaggttatcgatccattgccagatatcgatcattcacagatt
caatatcaaaagtttaataaaaacttttatgaggagcatgaggatattaaacgcttacac
tatatggatgtaattcgccttcaaaatacaatgaatcttcgagttggaggcctcaagccg
ccacgtccagtttgctcgtttgctcatttttcatttgataagctgttaatggaagcaatt
cggaagagtgaatatgagcagccgactccgattcaggccatggcgatcccctctgcatta
tctggaagagatgttctaggaattgccaaaaccggatcaggaaagactgcggcctatttg
tggcctgcaatcgttcatattatggatcaacccgatttgaaggctggagaaggcccggtt
gcagttattgtggttccgacgagagaattggcaattcaggtattccaagaggccaaaaaa
ttctgcaaagtttacaatattaatccaatttgtgcatatggtggaggtagtaaatgggaa
caatcaaatgaattacagaatgaaggagctgaaatggttgtttgtacaccgggtcgaatc
atcgatttagtgaagatgggagccaccaatttcctgcggacaacttttttagtttttgat
gaagctgatcgcatgtttgatatgggatttgaggctcaagtaaaatcaatatccgatcac
gtccgcccggatcgtcaatgcttaatgttcagtgcgacttttaaacaaaaagtggaacga
ctcgcccgagatgctctcgtagatcccgtacgaattgtacaaggagaagttggagaagcg
aatgctgatattgaacaaaaagtttttgtaatgcaaaatcaagatgttaaattgcattgg
cttattcgaaatttagtggaatttgcttctctcggaaaagtgctaatttttgtcacgaaa
aaattggattcggaagacgtcgcgaaaaagttgaaaatgaaagatttcgacattgtcctt
ctacatggagatatgctacaagcagagagaaatgaaaatttattgaaattccggaaaaaa
tcgcaaattctcgtggcaactgatgtggcagcacgcggactggatatttctgaaattcga
accgtaatcaatttcgatatggctcgtgacatcgatactcatgttcatcgaattggaaga
actggaagagctggtcacaaaggaacagcatacactcttgttactgaaaaagacattgaa
atggtcggacatttggtcaaaaatctggaaagtgtatcacaagaagtaccaaaaccttta
atggatcttgcaatgaagagttcatggtttagaggacaaagagctgggaatggaggacca
agtactggaacacagacacgtggaagaatgggtcttggatatacaccaaaagttagacaa
gttggaggaggtgccactggagcacaatttgatccattaaaagagcaaaaaagttgtaga
ggtggagggaatcagacagttgatggaatgatcagaaatgcacaaagctttgccacgtca
tcctcttcctcctcctcttcaagcagtggcccagcttccggagccaatagagcccaaatg
ctcaaaagtgcatttcagaaatcattccaaacaacatttcaacgacctacaaatgaatct
tcaaatcttccacagcaagtagcatcagatccaagaccagaatggaaaaagaaagtggat
gaattgaatgcaaagattgcacagcaacaggcttcttcagcttctggtggctcttcgagc
agcagctcttcctcaaaacgaagcagatgggaataa
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