Caenorhabditis elegans (nematode): CELE_C49H3.5
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Entry
CELE_C49H3.5 CDS
T00019
Symbol
ntl-4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CELE_C49H3.5 (ntl-4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cel03000
]
CELE_C49H3.5 (ntl-4)
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_C49H3.5 (ntl-4)
04121 Ubiquitin system [BR:
cel04121
]
CELE_C49H3.5 (ntl-4)
Enzymes [BR:
cel01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
CELE_C49H3.5 (ntl-4)
Transcription factors [BR:
cel03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
CELE_C49H3.5 (ntl-4)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CELE_C49H3.5 (ntl-4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CELE_C49H3.5 (ntl-4)
Ubiquitin system [BR:
cel04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
CELE_C49H3.5 (ntl-4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_2
Nup35_RRM_2
zf-UDP
DZR_2
Motif
Other DBs
NCBI-GeneID:
177580
NCBI-ProteinID:
NP_001294150
WormBase:
WBGene00003827
Ensembl:
WBGene00003827
UniProt:
W6RRU8
LinkDB
All DBs
Position
IV:7910575..7915189
Genome browser
AA seq
794 aa
AA seq
DB search
MSTCSDESCDKECPLCMETLELDDINFYPCKCEYQICRFCWHRIRTDENGLCPACRQPYP
EDPVNFKPMTTDDVRKHKDEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVVGLSPRVA
DPEILKKNEYFGRYGKIQKIVTSATPSLPAPHLPPSHTAYVTYKRVDDALRAIQGVHNSM
LDGRLVKASLGTTKYCSSFLNSRKCFKPECMYLHENAEAEISFTKDDMHLGKHTEYEKRL
IESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLEDDSDTVDDVERTGSAIHMCADDPDD
DDADSTNTSNSIDDPAPSNPADETVNSRRSNQTARERQWSERDEISVAPSNTPPTDPEGN
ENEFEEDIHRNDVSDLMSKLDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWEALL
GLSSPSAQSTIVEPSSLFPTFKMDSGFNSQSLFGTHTSSTPSFRREASPPPGLARFNSDD
DLGFDPFTESSKGLSALLQEEQEQIPPHNSASNHTLDVLKQLFGQLPEQRQSTQQHPQHL
QSSHQQHPLQQNQDQHHSFLHQLHAQQQHQQQQFAADMNRQQDYMYSRLMSQQQQQSQQQ
RQFDSTPGFSHPFGSMQQQQQSSQQQQHQSQSSQSSSLLQDLFNRQQQQHQAQQQAQQHQ
QQQMYAGINSYMYNDMLMPRVPFGMAPPPGLGGPSTNRSSTTQQAPPHMTQQSQQQQQQQ
QSSMGLFGMGGHQSMMQDHQSQQPQSAQDAFKALLPNVNVRFMDDNSMSRWSHENSLRSS
AVPPPPGFSSVMNR
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgtctacctgcagcgatgaaagttgcgataaggaatgccctttgtgcatggagaccctt
gaactggatgacatcaacttttatccatgcaaatgcgagtaccagatttgccgattttgc
tggcatcgtatacgaaccgatgaaaatggattatgtcctgcttgccggcagccatatcct
gaagaccctgtcaattttaagccaatgacaaccgacgatgtgcgaaaacacaaggacgaa
caacgattgaaaaaacaagcggaaaaactgaaattatcggatgcacgccaatatctttgt
aattaccgtgtactccaaaagaatcttgtctacgtcgtgggattatcacctcgtgtagca
gatcctgagattttgaagaaaaatgagtatttcggtcggtacggtaaaattcagaagatc
gtaacgagtgcgacaccgtcattacctgcacctcatcttccacctagtcatacggcttac
gtaacgtataaaagagttgatgacgcgctaagagcaattcaaggcgtacataactcaatg
ttggatggtaggttagtgaaagcatcacttggaacaaccaagtattgttcttcatttttg
aatagtcggaagtgtttcaaaccggaatgtatgtatttgcatgaaaacgctgaagctgaa
ataagtttcacaaaagatgatatgcatcttggaaagcacacagaatacgagaaacgatta
attgaatcgatgaatagccgacctccgccgccacaatcgacacttgcatcacaattggat
aaaatactggcgccaacgtcaaattcaccacggcgatatcttgaagatgattctgacaca
gttgatgacgttgagcgaacaggctcagcgatacacatgtgtgcggatgatcctgatgat
gatgatgcagattctacgaacacaagcaattctatcgacgacccggcaccttcaaatcca
gcagatgagacagttaacagtagacggagtaatcagacagccagagagcgacagtggtca
gaacgcgacgaaatttcagtggcgcccagcaatacacctcctacagatcctgaaggaaat
gaaaacgagtttgaagaggacatccatagaaacgatgttagtgatcttatgtcaaaatta
gatgtaaatgacgaccggctggcccggacatcattctcagaaaatgattatcttgggatt
ccggcaccagcaaagcatcaagaagcaccagctcctcttatgcaatgggaagcattgctc
ggattgtcatcaccttctgcacaatcaacgatcgtcgaaccttcgtcactattcccaacg
ttcaaaatggattcaggattcaattcacaatcgttattcggaacacacacatctagcaca
ccgtcgttcagaagagaggctagtcctccacccggtctcgctaggttcaattcagacgat
gatcttggattcgatccgttcaccgaatcatcaaagggattgtcagcgttgttacaagaa
gaacaagaacagattccaccacacaattcagcatcaaatcatactttagatgtgttaaaa
caattgtttggtcaattacccgagcagcgacagtcaacccagcagcatccacaacatctt
caatcatcacatcaacagcatccattacaacagaatcaagatcaacatcattcgttcctt
catcagttacatgcacagcaacagcatcaacaacaacagtttgcagcagatatgaacagg
caacaggactatatgtatagtagacttatgtcacagcaacaacagcaatcacaacagcag
agacagttcgactcgacgcctggattttcacatccattcggaagtatgcagcagcaacaa
cagtcttcacagcaacaacaacatcagtctcagtcgtcacagtcgtccagtcttctacaa
gacttgttcaatcgccaacagcaacaacatcaagcgcagcaacaagcacaacaacatcaa
caacagcagatgtatgctggaatcaactcatacatgtacaatgacatgttgatgcctcga
gtaccatttggaatggcaccacctccaggactcggaggtccatctacgaacagatcttcc
acgacacaacaagcacctccacacatgacacaacaatcacaacaacaacagcaacagcaa
cagtcaagtatgggattgttcggaatgggaggccatcaaagtatgatgcaggatcatcaa
tcacagcagccacaatctgcacaagatgcattcaaagctcttcttccaaatgtaaatgtt
cggtttatggatgataattcgatgtctcgttggtcgcatgagaacagtctgcgatcatca
gccgtcccaccaccacccggtttttcttctgtgatgaaccgataa
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integrated database retrieval system
