KEGG   Caenorhabditis elegans (nematode): CELE_CC4.3
Entry
CELE_CC4.3        CDS       T00019                                 
Symbol
smu-1
Name
(RefSeq) Smu-1 suppressor of mec-8 and unc-52 protein
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
cel  Caenorhabditis elegans (nematode)
Brite
KEGG Orthology (KO) [BR:cel00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cel03041]
    CELE_CC4.3 (smu-1)
Spliceosome [BR:cel03041]
 Complex B
  Other components
   Complex B specific factors
    CELE_CC4.3 (smu-1)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WDR55 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_CAF1B_HIR1 LisH_TPL Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_Nup120_160 Beta-prop_DCAF4 NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_NWD2_C Ge1_WD40 Beta-prop_SPT8 Beta-prop_WDR19_1st WD40_like WD40_RFWD3 WDR54 PROPPIN GerA Beta-prop_NOL10_N Beta-prop_IP5PC_F LisH_WDR26 zf_topless FlgD_ig
Other DBs
NCBI-GeneID: 173175
NCBI-ProteinID: NP_493279
WormBase: WBGene00004895
Ensembl: WBGene00004895
UniProt: G5EEG7
Structure
LinkDB
Position
I:12995803..13004334
AA seq 510 aa
MSSIEIESSDVIRLIEQFLKESNLHRTLAILQEETNVSLNTVDSIDGFCNEITSGNWDNV
LKTVQSLKLPAKKLIDLYEHVIIELVELRELATARLVARQTDPMILLKQIDPDRFARLES
LINRPYFDGQEVYGDVSKEKRRSVIAQTLSSEVHVVAPSRLLSLLGQSLKWQLHQGLLPP
GTAIDLFRGKAAQKEQIEERYPTMMARSIKFSTKSYPESAVFSPDANYLVSGSKDGFIEV
WNYMNGKLRKDLKYQAQDNLMMMDAAVRCISFSRDSEMLATGSIDGKIKVWKVETGDCLR
RFDRAHTKGVCAVRFSKDNSHILSGGNDHVVRVHGMKSGKCLKEMRGHSSYITDVRYSDE
GNHIISCSTDGSIRVWHGKSGECLSTFRVGSEDYPILNVIPIPKSDPPQMIVCNRSNTLY
VVNISGQVVRTMTSGKREKGDFINCILSPKGEWAYAIAEDGVMYCFMVLSGTLETTLPVT
ERLPIGLAHHPHQNLIASYAEDGLLKLWTD
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgtcatcgattgagatcgaatcttcagatgtaatccgtctcatcgaacaattcctcaaa
gaatcgaatttgcaccgaactctggcgattttgcaggaagaaaccaacgtttcgctcaat
acagtcgactcaattgatggattttgtaatgaaattacgtctggaaattgggataacgtg
ttgaaaaccgttcaatcgttgaaattacccgccaagaaacttatcgatctgtatgaacat
gtaataatcgagcttgtggagctccgtgagctggcgaccgcccgtctcgtcgcccgtcag
actgatccaatgattttgctaaaacaaattgatccggatcgattcgcccgcctggaatct
cttatcaaccgcccgtatttcgatggacaagaggtttatggagatgttagtaaagagaaa
cgacgctccgtaattgcacaaactctttcatcagaagttcatgtagttgctccgtcaaga
cttttgagtttacttggacaatcacttaaatggcaacttcatcaaggacttcttccacct
ggaactgcaattgatttatttagaggaaaagctgcacagaaagagcaaattgaagaaaga
tatccgactatgatggctagaagcattaaattctcaacgaaaagttatcccgaatcggca
gttttctcaccggacgctaattatcttgtttctggctcaaaagacggatttatcgaagtt
tggaattatatgaatggaaaattgagaaaggatttgaaatatcaggcccaagataatcta
atgatgatggatgcagcagtgagatgtatatcatttagtcgtgattctgaaatgctcgcc
acaggctcaattgacggaaaaattaaagtttggaaagtggaaactggtgattgtcttcga
agatttgatagagctcacacgaaaggagtttgtgctgttcgattctcaaaagataattca
catattttgtcgggtggaaatgatcatgttgtgagagttcatggaatgaagagcggaaaa
tgtttgaaggaaatgcgtgggcactcgagttatattacagatgtcagatattccgatgag
ggaaatcatattatctcatgttcaacagatggttcaattcgtgtttggcatggaaaatcg
ggtgaatgcctttcaacattccgtgttggaagtgaagattatccaatattaaatgtgatt
ccaattccgaaaagtgatccaccacaaatgattgtatgcaatcgatccaataccctctac
gttgttaatatttctggacaggtggttcgtacgatgacgtcaggaaagcgtgagaaagga
gacttcatcaactgcattttatcgccgaaaggagaatgggcatacgcaattgcagaggac
ggtgtcatgtactgttttatggtattatcgggtaccctggaaactactcttcccgtgaca
gaacgtcttccaattggtttggctcatcatccacatcagaatctcatcgcttcatatgca
gaagatggacttttaaaattatggaccgattaa

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