KEGG   Caenorhabditis elegans (nematode): CELE_F23B2.6
Entry
CELE_F23B2.6      CDS       T00019                                 
Symbol
aly-2
Name
(RefSeq) Chromatin target of PRMT1 protein C-terminal domain-containing protein
  KO
K12881  THO complex subunit 4
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03013  Nucleocytoplasmic transport
cel03015  mRNA surveillance pathway
cel03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CELE_F23B2.6 (aly-2)
  09122 Translation
   03013 Nucleocytoplasmic transport
    CELE_F23B2.6 (aly-2)
   03015 mRNA surveillance pathway
    CELE_F23B2.6 (aly-2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_F23B2.6 (aly-2)
   03041 Spliceosome [BR:cel03041]
    CELE_F23B2.6 (aly-2)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CELE_F23B2.6 (aly-2)
    TREX complex
     CELE_F23B2.6 (aly-2)
Spliceosome [BR:cel03041]
 Complex C
  Other components
   EJC/TREX
    CELE_F23B2.6 (aly-2)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CELE_F23B2.6 (aly-2)
SSDB
Motif
Pfam: FoP_duplication SecDF_P1_head RRM_1
Other DBs
NCBI-GeneID: 177738
NCBI-ProteinID: NP_501594
WormBase: WBGene00000121
Ensembl: WBGene00000121
UniProt: O62183
LinkDB
Position
IV:9147468..9148579
AA seq 227 aa
MVKATAIDMSLSDIISTNRKNKKVVKKPIKKSAGGIRKRGNASNVGTPRRQSGGTSRGGG
RMGNTVRRSAGGSSNDNKQVRINISNLAETVISSDLQELFGAFNLHKVSVNFNENGGAAG
TGDITLKKYDADRLIQKFAGVALDGKVMHFAVIESSNFARKPEIRGTPNRRQSSGKPINR
KVANPPRRQNAAKPPVKKGKKPAREQKPPKTAEQLDAELDAYMSRSA
NT seq 684 nt   +upstreamnt  +downstreamnt
atggtgaaggccactgcaattgatatgtccctttcggacatcatttcaacaaatagaaag
aataagaaagtcgtcaagaaaccaatcaagaaatcagcaggaggaatcagaaagagagga
aatgcatcaaatgtcggaactccacgacgtcaaagtgggggaacttctcgcggtggagga
agaatgggaaacactgttcgcagatcagcaggtggatcttcaaatgacaacaaacaagtc
agaatcaacatttcgaatctggccgaaactgtaatctcgagtgatttgcaagagttattc
ggtgcttttaatttgcacaaagtgtcagtaaatttcaacgaaaatggaggagccgctgga
accggagatatcactcttaagaagtacgatgcagatcgccttattcagaagtttgctgga
gttgcccttgatggaaaggtcatgcacttcgctgtcatcgaatccagcaatttcgccaga
aaacctgaaatcagaggaacacccaaccgcagacagtcatctggaaagccgatcaacaga
aaagtggccaatccgccaagaagacaaaatgctgccaaaccaccagtgaagaagggcaag
aaaccagctcgtgagcaaaaaccaccaaaaaccgcggagcaacttgacgcagagctcgat
gcatacatgtctcgaagcgcctga

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