Caenorhabditis elegans (nematode): CELE_F30F8.8
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Entry
CELE_F30F8.8 CDS
T00019
Symbol
taf-5
Name
(RefSeq) Transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CELE_F30F8.8 (taf-5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cel03021
]
CELE_F30F8.8 (taf-5)
03036 Chromosome and associated proteins [BR:
cel03036
]
CELE_F30F8.8 (taf-5)
Transcription machinery [BR:
cel03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
CELE_F30F8.8 (taf-5)
Coactivators
SAGA/TFTC/STAGA complex
CELE_F30F8.8 (taf-5)
Chromosome and associated proteins [BR:
cel03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
CELE_F30F8.8 (taf-5)
STAGA complex
CELE_F30F8.8 (taf-5)
TFTC complex
CELE_F30F8.8 (taf-5)
SAGA complex
CELE_F30F8.8 (taf-5)
SLIK complex
CELE_F30F8.8 (taf-5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WD40_CDC20-Fz
EIF3I
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
WD40_like
Beta-prop_WDR75_1st
RMC1_N
KNTC1_N
Beta-prop_IFT122_1st
Cytochrom_D1
WD40_RFWD3
LisH
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
172552
NCBI-ProteinID:
NP_492169
WormBase:
WBGene00006386
Ensembl:
WBGene00006386
UniProt:
G5EF68
LinkDB
All DBs
Position
I:7849813..7853636
Genome browser
AA seq
648 aa
AA seq
DB search
MDSENSSSHSISSPQMFQNTHNNSAMEDNLLSRPMNNESLQMIIGYLRRNGLTETEELLT
REAGPVLRVEGSNGLPPEEAISVEFDTFVQHANDCTDVVQAEFSQLLFPIFAHSYIALIE
KHAATARIFFNRFKIFIPECFSEFVYQLSLIEDAMTLRANEHVHILRENKFLVRLSRPTL
KHLESIQTRVIGVKNIIAKHICIENADEVSTNRTTIETQMGGILGVTSKSDKRHKMMFSV
LKDELMQNIEKRKTKGKDWKDMGKKMQTHCPQADRIPLPPISEHLREERRNWLRDVGKMA
IISAESPVSICMYTTVNAPIGVASCDFTDDSSLIAMGLSDSSIVMNAMDPMNKMKKLRDM
EFLDKIDIETADNVQSQMFDLQGSTTSVRYTGHGGPVFSVNFSPDRRLLISSAGDRTVRL
WSMETQRNAVIYRTPAVVWQAQFCSRGYYFATASADKTAAMWSTDRMHPLRIFADPYGDV
GCIDYHPNCNYIAGGSDDRYVRVWDVCSGTRVRIFSGHKASIIAVKFSPCGRYIVSLDAI
GNLMIWDLAYQRLVAAEITEQAGTKGSITFSRDGGVFAVSHGNSSIQLYSLDTLIGTVLA
AGQNDSYIEPKVNLDGFNIGSYATKETAVIGLHFTRRNLLLGFGCFGQ
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggatagcgagaattcgagtagtcattcgataagttctccacaaatgtttcaaaacacg
cacaacaattcagcaatggaggataatttgctttctcggccaatgaacaatgaatcactt
caaatgattattggatacttacgacgaaatggtttaacagaaactgaagagcttttgact
cgagaagctggaccagtacttagagttgaaggatctaatggattacctccagaagaagcg
atatccgttgaattcgacacatttgtccagcacgcaaacgattgtacagatgttgttcaa
gcggaattcagtcaacttttatttcctatatttgcacacagctatatagctttaattgaa
aagcatgccgcaactgcccgtatattcttcaatcgattcaagattttcattcctgaatgt
ttctcggaatttgtatatcaattatcactaatcgaagatgcaatgacgttacgagccaat
gaacatgttcacattttacgagaaaataaatttcttgttcgactttcgaggccaacactg
aaacatcttgaatcaattcaaacgagagtgattggtgttaagaatataattgcaaaacat
atttgtattgaaaatgctgacgaagtatccacaaatcgaacgacaatagaaacccaaatg
ggtggaattcttggagtaacttcgaaaagtgataaaagacataaaatgatgttttcggtg
ttaaaagacgaattgatgcagaatattgaaaaacggaagacaaaaggaaaagattggaaa
gatatgggaaagaaaatgcagacgcattgcccacaagctgaccgaattcctcttccacca
atcagcgaacatcttcgagaggaacgacgaaattggcttcgagacgtcggaaaaatggcc
atcatttcagctgaatcacccgtttccatttgtatgtacacaacagtaaatgcaccaatt
ggagtggcttcatgtgattttacggatgattcaagtcttattgcaatgggtttatctgat
tcttcaattgttatgaatgcaatggatccgatgaataagatgaagaagcttcgtgatatg
gaatttcttgataaaatcgatattgaaactgcggataacgtgcaatcacaaatgtttgat
ttacaaggatcaacgacaagtgtgaggtatacaggccacggtggtcccgtgttttctgtc
aatttttcaccggatcgacgacttcttatatcatctgccggagatcgaacagttcgactt
tggagtatggagactcagaggaatgctgttatttatagaacaccagcagtagtttggcag
gctcaattctgtagtcgtggatactatttcgctacagcaagtgccgataaaacagctgca
atgtggtcgacagatcgaatgcatccacttagaatattcgctgatccatatggagacgtt
ggatgtattgattatcatccaaattgtaattatattgctggaggatcagatgatagatat
gttcgagtatgggatgtttgttctggtactcgagttcgcatttttagtggtcataaagct
tcgattatcgctgtcaagttctccccatgtggtcggtatatcgtctcgttagatgctatt
ggaaatctgatgatttgggatttggcataccagagattagttgcagctgaaattacggaa
caagctggaacgaagggttcaattacattctctcgtgatggtggtgtatttgcggtatcc
catggaaattcaagtattcaattatattcacttgatactcttattggaacagttctcgcc
gctggacaaaatgattcctacattgagccaaaagtgaatctggacggtttcaatatagga
tcatatgcaacaaaagaaactgcagtaatcggactccatttcactcgtcgaaatcttctt
cttggatttggttgcttcgggcaataa
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integrated database retrieval system
