Caenorhabditis elegans (nematode): CELE_F33D11.10
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Entry
CELE_F33D11.10 CDS
T00019
Symbol
F33D11.10
Name
(RefSeq) RNA helicase
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03013
Nucleocytoplasmic transport
cel03015
mRNA surveillance pathway
cel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CELE_F33D11.10 (F33D11.10)
09122 Translation
03013 Nucleocytoplasmic transport
CELE_F33D11.10 (F33D11.10)
03015 mRNA surveillance pathway
CELE_F33D11.10 (F33D11.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_F33D11.10 (F33D11.10)
03041 Spliceosome [BR:
cel03041
]
CELE_F33D11.10 (F33D11.10)
03009 Ribosome biogenesis [BR:
cel03009
]
CELE_F33D11.10 (F33D11.10)
03012 Translation factors [BR:
cel03012
]
CELE_F33D11.10 (F33D11.10)
Enzymes [BR:
cel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CELE_F33D11.10 (F33D11.10)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CELE_F33D11.10 (F33D11.10)
mRNA cycle factors
Stress granule specific factors
CELE_F33D11.10 (F33D11.10)
Spliceosome [BR:
cel03041
]
Complex C
Other components
EJC/TREX
CELE_F33D11.10 (F33D11.10)
Ribosome biogenesis [BR:
cel03009
]
Eukaryotic type
90S particles
Helicases
CELE_F33D11.10 (F33D11.10)
Translation factors [BR:
cel03012
]
Eukaryotic type
Initiation factors
eIF-4
CELE_F33D11.10 (F33D11.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_30
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
172258
NCBI-ProteinID:
NP_491703
WormBase:
WBGene00018007
Ensembl:
WBGene00018007
UniProt:
O44781
LinkDB
All DBs
Position
I:complement(5866562..5868139)
Genome browser
AA seq
399 aa
AA seq
DB search
MAGKKAEKDDMATVEFESSEEVNVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAI
LKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDY
MNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEM
LNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK
QFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDME
QKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFG
RKGVAINFVKQDDVRILRDIEQYYSTQIDEMPMNIADII
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggctggtaaaaaagcagaaaaagatgatatggcaacagtggaattcgaatcttctgaa
gaagtaaatgttattccaacatttgacaaaatgggtttgcgagaagaccttcttcgtgga
atttatgcctatggattcgaaaaaccatcggctattcaacaaagagcagttccagcaatt
cttaaagcacgtgacgtcattgctcaagctcaatctggaaccggaaagactgcgactttt
tcaatttccgttcttcaatcattggatacacaagttcgagagacacaagcacttattctt
tctccaaccagagaattggctgtccagattcaaaaagtagttcttgctctcggagactat
atgaatgttcaatgtcatgcctgtatcggaggaacaaatctcggagaagacattcgcaaa
ttggattacggtcaacacgtggtttctggtactccaggacgagtatttgatatgattcgc
cgtcgtaatcttcgtacccgagcgatcaagcttctggttcttgacgaagccgatgaaatg
ctgaataaaggtttcaaggagcagttgtacgatatctaccgatatcttccacctggagca
caagtcgtacttctgtcagccacactgcctcatgaaattctagagatgaccagtaaattc
atgacagatcctatcagaattcttgtgaaacgtgatgaactgacacttgaaggaatcaag
caattcttcgttgcagttgacagagaagaatggaagttcgacactcttattgatctttat
gatactcttaccatcacacaggctgtactattctgtaatacccgtagaaaggttgattgg
ttgacggataaaatgaaggaagccaacttcacagtgtcatcaatgcacggagatatggaa
cagaaggatcgtgatgaagttatgaaagagttcagagcaggaacaacgagagtgctcatt
tcaactgatgtttgggcgagaggattagatgttccacaagtctcgttggttatcaactat
gatcttccaaacaatcgtgaattatacattcatcgtattggtcgttctggacgtttcgga
cgcaagggagtcgccatcaactttgtgaagcaagatgatgtcagaattctgcgagacatt
gagcaatactattcgacacaaatcgacgaaatgcccatgaatattgcggatatcatttga
DBGET
integrated database retrieval system
