Caenorhabditis elegans (nematode): CELE_F40F8.9
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Entry
CELE_F40F8.9 CDS
T00019
Symbol
lsm-1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CELE_F40F8.9 (lsm-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_F40F8.9 (lsm-1)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CELE_F40F8.9 (lsm-1)
mRNA degradation factors
5'-3' decay
Lsm complex
CELE_F40F8.9 (lsm-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
174700
NCBI-ProteinID:
NP_496385
WormBase:
WBGene00003076
Ensembl:
WBGene00003076
UniProt:
Q20229
LinkDB
All DBs
Position
II:11126950..11127528
Genome browser
AA seq
125 aa
AA seq
DB search
MDLPDPYLPGAISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYF
CETGQGFMLIRGENVELAGEIDDTIETGLTQVSPEEFRRLEDEYIAKNPPKFLKRQAEKT
EEHDA
NT seq
378 nt
NT seq
+upstream
nt +downstream
nt
atggacttgcccgatccctatttacccggagcaataagcttgttcgagcagcttgacaaa
aaattattagttgttctccgcgacggacggaaattgattggcttcttgagatcgatagat
caatttgccaatcttatattggaagatgtcgtagaacgcacatttgttgagaaatacttc
tgtgaaacgggtcaaggattcatgcttattcgcggagagaatgttgagcttgctggagaa
atcgatgataccattgagactggacttacgcaggtgtctcccgaagaatttcgtcggctg
gaggatgagtatattgccaaaaatccgccaaagttcctaaaacgacaagcagagaaaaca
gaagaacacgatgcatga
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